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...tcagacagtactggttcttgtgctgtcaatttcgggacttcagttttattaattattaacctgtgacatcaattttattctgactggtttctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCTCTAAATAAAGCAAGGAGCCTTATCCATCCACCTGTGAAGAAGCCATCCA
species | Oryza sativa |
transcript | LOC_Os01g03070.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATG GACATTGAATCTGATTGTCCCAGTAATCACCTAAGTGTTTTGGCTGATTCTEST: gi|88964806|gb|CI084804.1|CI084804
genomic: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATGgtatgtggtt ... ctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCT
EST: TTGCTATGAAAGACAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATG GACATTGAATCTGATTGTCTCAGTAACCACCTAAGTGTTTTGGCTGATTCTEST: gi|89192877|gb|CI050175.1|CI050175
genomic: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATGgtatgtggtt ... ctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCT
EST: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATG GACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCTEST: gi|86429925|gb|CI082348.1|CI082348
genomic: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATGgtatgtggtt ... ctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCT
EST: TTGCTATGAAAGACAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATG GACATTGAATCTGATTGTCTCAGTAACCACCTAAGTGTTTTGGCTGATTCTEST: gi|89185749|gb|CI047618.1|CI047618
genomic: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATGgtatgtggtt ... ctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCT
EST: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATG GACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCTEST: gi|88263846|gb|CI367620.1|CI367620
genomic: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATGgtatgtggtt ... ctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCT
EST: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATG GACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCTEST: gi|58695557|gb|CK084244.1|CK084244
genomic: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATGgtatgtggtt ... ctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCT
EST: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATG GACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCTEST: gi|86432397|gb|CI086008.1|CI086008
genomic: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATGgtatgtggtt ... ctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCT
EST: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATG GACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCT
genomic: TTGCTATGAAAGTCAACCATTTATCAGGAGCTGTCCATTTTGGGAAAATGgtatgtggtt ... ctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCT
ttattaattattaacctgtgacatcaattttattctgactggtttctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCTCTAAATAAAGCAAGGAGCCTTATCCATCCACCTGTGAAGAAGCCATCCA
tttctgttt CT-rich tract
acatcaattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagacagtactggttcttgtgctgtcaatttcgggacttcagttttattaattattaacctgtgacatcaattttattctgactggtttctgtttgtagGACATTGAATCTGATTGTCTCAGTAATCACCTAAGTGTTTTGGCTGATTCTCTAAATAAAGCAAGGAGCCTTATCCATCCACCTGTGAAGAAGCCATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC