1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...actagacatttgaatacaccaggcgatttgttcctgtcagggaatagacagctgtcttctctccttcgcacatattttaaattgccctttttgcttgcagAACATTTTCCAGGAAAGAATTGTCCAACGTCGTGAAGCTGAGTTTAGTCGTCTTAAGAAAGAGAGGGATGAAAGGACTAGTCAATTGATATCATCAAGGA
species | Oryza sativa |
transcript | LOC_Os01g03070.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAGGTGACCTGCAGGAGAAGAACAGACTTTCTCGAATGTTGGAGCATAAG AACATTTTCCAGGAAAGAATTGTCCAACGTCGTGAAGCTGAGTTTAGTCGTEST: gi|88321263|gb|CI533013.1|CI533013
genomic: CAGGTGACCTGCAGGAGAAGAACAGACTTTCTCGAATGTTGGAGCATAAGgtaagcaaat ... ttgcttgcagAACATTTTCCAGGAAAGAATTGTCCAACGTCGTGAAGCTGAGTTTAGTCGT
EST: CAGGTGACCTGCAGGAGAAGAACAGACTTTCTCGAATGTTGGAGCATAAG AACATTTTCCAGGAAAGAATTGTCCAACGTCGTGAAGCTGAGTTTAGTCGTEST: gi|88296584|gb|CI537551.1|CI537551
genomic: CAGGTGACCTGCAGGAGAAGAACAGACTTTCTCGAATGTTGGAGCATAAGgtaagcaaat ... ttgcttgcagAACATTTTCCAGGAAAGAATTGTCCAACGTCGTGAAGCTGAGTTTAGTCGT
EST: CAGGTGACCTGCAGGAGAAGAACAGACTTTCTCGAATGTTGGAGCATAAG AACATTTTCCAGGAAAGAATTGTCCAACGTCGTGAAGCTGAGTTTAGTCGT
genomic: CAGGTGACCTGCAGGAGAAGAACAGACTTTCTCGAATGTTGGAGCATAAGgtaagcaaat ... ttgcttgcagAACATTTTCCAGGAAAGAATTGTCCAACGTCGTGAAGCTGAGTTTAGTCGT
agacagctgtcttctctccttcgcacatattttaaattgccctttttgcttgcagAACATTTTCCAGGAAAGAATTGTCCAACGTCGTGAAGCTGAGTTTAGTCGTCTTAAGAAAGAGAGGGATGAAAGGACTAGTCAATTGATATCATCAAGGA
ttgccctttttgctt CT-rich tract
acatattttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actagacatttgaatacaccaggcgatttgttcctgtcagggaatagacagctgtcttctctccttcgcacatattttaaattgccctttttgcttgcagAACATTTTCCAGGAAAGAATTGTCCAACGTCGTGAAGCTGAGTTTAGTCGTCTTAAGAAAGAGAGGGATGAAAGGACTAGTCAATTGATATCATCAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG