1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAGAGAGCATGTCACACCATGGTTCAAGTTTCTCTGGGAAACATACAGAACAGTTCTTGAGATATTGAGAAACAATTCAAAGCTTGAAGCATTATATGCTgtaagctattctatctgtgttccccttattcctgtatacatactcttcacacatgacatggcatttcatctggctgttccattttgtgtacacaatcaat...
species | Oryza sativa |
transcript | LOC_Os01g03070.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGTTCTTGAGATATTGAGAAACAATTCAAAGCTTGAAGCATTATATGCT ATGACTGCTCACAAGGCTTTTCAATTTTGTAAGCAGTATAAGAGAACGACTEST: gi|58657791|gb|CK046471.1|CK046471
genomic: CAGTTCTTGAGATATTGAGAAACAATTCAAAGCTTGAAGCATTATATGCTgtaagctatt ... cattttgcagATGACTGCTCACAAGGCTTTTCAATTTTGTAAGCAGTATAAGAGAACGACT
EST: GCATTATATGCT ATGACTGCTCACAAGGCTTTTCAATTTTGTAAGCAGTATAAGAGAACGACTEST: gi|7212736|gb|AU062512.2|AU062512
genomic: GCATTATATGCTgtaagctatt ... cattttgcagATGACTGCTCACAAGGCTTTTCAATTTTGTAAGCAGTATAAGAGAACGACT
EST: CAGTTCTTGAGATATTGAGAAACAATTCAAAGCTTGAAGCATTATATGCT ATGACTGCTCACAAGGCTTTTCAATTTTGEST: gi|58661569|gb|CK050249.1|CK050249
genomic: CAGTTCTTGAGATATTGAGAAACAATTCAAAGCTTGAAGCATTATATGCTgtaagctatt ... cattttgcagATGACTGCTCACAAGGCTTTTCAATTTTG
EST: CAGTTCTTGAGATATTGAGAAACAATTCAAAGCTTGAAGCATTATATGCT ATGACTGCTCACAAGGCTTTTCAATTTTGTAAGCAGTATAAGAGAACGACT
genomic: CAGTTCTTGAGATATTGAGAAACAATTCAAAGCTTGAAGCATTATATGCTgtaagctatt ... cattttgcagATGACTGCTCACAAGGCTTTTCAATTTTGTAAGCAGTATAAGAGAACGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGAGCATGTCACACCATGGTTCAAGTTTCTCTGGGAAACATACAGAACAGTTCTTGAGATATTGAGAAACAATTCAAAGCTTGAAGCATTATATGCTgtaagctattctatctgtgttccccttattcctgtatacatactcttcacacatgacatggcatttcatctggctgttccattttgtgtacacaatcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC