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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTAAAGCTTACCCTCAGCAAGGCTCGAGTCAAGCTGACTGAGAATACAATTTTCAATAGGATCATTACTGACAGTAACGGCTCAGATCCATTTAGTGgtaatgtcttgtcagttaaacggacgccttgatattttctctgctttgactgatggattcttggtgtacatgtag

Basic information

species Oryza sativa
transcript LOC_Os01g01790.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623733|gb|CB628744.1|CB628744
EST:     GATCCATTTAGTG                         GTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
genomic: GATCCATTTAGTGgtaatgtctt ... gtacatgtagGTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
EST: gi|25802741|gb|CA758702.1|CA758702
EST:     GGCTCAGATCCATTTAGTG                         GTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
genomic: GGCTCAGATCCATTTAGTGgtaatgtctt ... gtacatgtagGTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
EST: gi|29624183|gb|CB629194.1|CB629194
EST:     GATCCATTTAGTG                         GTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
genomic: GATCCATTTAGTGgtaatgtctt ... gtacatgtagGTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
EST: gi|29630522|gb|CB635531.1|CB635531
EST:     CAATAGGATCATTACTGACAGTAACGGCTCAGATCCATTTAGTG                         GTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
genomic: CAATAGGATCATTACTGACAGTAACGGCTCAGATCCATTTAGTGgtaatgtctt ... gtacatgtagGTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
EST: gi|58690330|gb|CK079017.1|CK079017
EST:     AATTTTCAATAGGATCATTACTGACAGTAACGGCTCAGATCCATTTAGTG                         GTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
genomic: AATTTTCAATAGGATCATTACTGACAGTAACGGCTCAGATCCATTTAGTGgtaatgtctt ... gtacatgtagGTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
EST: gi|218496693|gb|FG970613.1|FG970613
EST:     AATTTTCAATAGGATCATTACTGACAGTAACGGCTCAGATCCATTTAGTG                         GTCTCTATGTGAGGAGCATTTAGTCCATAT
genomic: AATTTTCAATAGGATCATTACTGACAGTAACGGCTCAGATCCATTTAGTGgtaatgtctt ... gtacatgtagGTCTCTATGTG-GGAGCATTTAGTCCATAT
EST: gi|29624598|gb|CB629609.1|CB629609
EST:     GATCCATTTAGTG                         GTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
genomic: GATCCATTTAGTGgtaatgtctt ... gtacatgtagGTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
EST: gi|29669220|gb|CB665495.1|CB665495
EST:     CAGATCCATTTAGTG                         GTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
genomic: CAGATCCATTTAGTGgtaatgtctt ... gtacatgtagGTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
EST: gi|29621884|gb|CB626895.1|CB626895
EST:     GATCCATTTAGTG                         GTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC
genomic: GATCCATTTAGTGgtaatgtctt ... gtacatgtagGTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCC