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gtgcactgatgaaactgatattagtagtttgtattatagtcttcacgcagttcacaaaaaaaacaagaactctgttatgtctagttgtgatatttgtatttacgaaatttttagacagGTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCATCAGCAACTGCAGAAAGTCCAGCTAAGGAAGAGAATGAAAGCTCATTGG
species | Oryza sativa |
transcript | LOC_Os01g01790.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATTTGAAATTTTCCTTGTCAGAGATGACGATGAGACATATACAATGAAG GTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCAEST: gi|29617631|gb|CB622643.1|CB622643
genomic: TATTTGAAATTTTCCTTGTCAGAGATGACGATGAGACATATACAATGAAGgtgcactgat ... ttttagacagGTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCA
EST: TATTTGAAATTTTCCTTGTCAGAGATGACGATGAGACATATACAATGAAG GTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCAEST: gi|58592185|gb|CF990493.1|CF990493
genomic: TATTTGAAATTTTCCTTGTCAGAGATGACGATGAGACATATACAATGAAGgtgcactgat ... ttttagacagGTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCA
EST: TATTTGAAATTTTCCTTGTCAGAGATGACGATGAGACATATACAATGAAG GTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCAEST: gi|29617658|gb|CB622670.1|CB622670
genomic: TATTTGAAATTTTCCTTGTCAGAGATGACGATGAGACATATACAATGAAGgtgcactgat ... ttttagacagGTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCA
EST: TATTTGAAATTTTCCTTGTCAGAGATGACGATGAGACATATACAATGAAG GTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCA
genomic: TATTTGAAATTTTCCTTGTCAGAGATGACGATGAGACATATACAATGAAGgtgcactgat ... ttttagacagGTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCA
caagaactctgttatgtctagttgtgatatttgtatttacgaaatttttagacagGTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCATCAGCAACTGCAGAAAGTCCAGCTAAGGAAGAGAATGAAAGCTCATTGG
ttttt CT-rich tract
atatttgtatttacga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcactgatgaaactgatattagtagtttgtattatagtcttcacgcagttcacaaaaaaaacaagaactctgttatgtctagttgtgatatttgtatttacgaaatttttagacagGTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCATCAGCAACTGCAGAAAGTCCAGCTAAGGAAGAGAATGAAAGCTCATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA