1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGCTATTTATACATAAGGTGGAAGGTAAAAgtaatcactgattctcaacttggcagaagggtgctattgaacaattataaacacatcatcttagactatcagacaagcaaagttttctctttttctctctccttccttttcattttagggcaactgtcataatccacaaaatggggcaatcaagctaactcggtgatttacag
species | Oryza sativa |
transcript | LOC_Os01g01070.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGTTGTTGCTGGGGCTATCGGCTATTTATACATAAGGTGGAAGG----- G-TTGGAAACTTTCTGATTTGATGTTTGTGACGAAGCGTGGCTTATCTGATEST: gi|88315903|gb|CI618779.1|CI618779
genomic: CTGTTGTTGCTGGGGCTATCGGCTATTTATACATAAGGTGGAAGGTAAAAgtaatcactg ... tgatttacagGGTTGGAAACTTTCTGATTTGATGTTTGTGACGAAGCGTGGCTTATCTGAT
EST: CTGTTGTTGCTGGGGCTATCGGCTATTTATACATAAGGTGGAAGG----- G-TTGGAAACTTTCTGATTTGATGTTTGTGACGAAGCGTGGCTTATCTGATEST: gi|58687220|gb|CK075907.1|CK075907
genomic: CTGTTGTTGCTGGGGCTATCGGCTATTTATACATAAGGTGGAAGGTAAAAgtaatcactg ... tgatttacagGGTTGGAAACTTTCTGATTTGATGTTTGTGACGAAGCGTGGCTTATCTGAT
EST: CTGTTGTTGCTGGGGCTATCGGCTATTTATACATAAGGTGGAA-G----- GGTTGGAAACTTTCTGATTTGATGTTTGTGACGAAGCGTGGCTTATCTGATEST: gi|33658119|gb|CF280733.1|CF280733
genomic: CTGTTGTTGCTGGGGCTATCGGCTATTTATACATAAGGTGGAAGGTAAAAgtaatcactg ... tgatttacagGGTTGGAAACTTTCTGATTTGATGTTTGTGACGAAGCGTGGCTTATCTGAT
EST: TGTTGTTGCTGGGGCTATCGGCTATTTATACATAAGGGTGGAAGGTAAAA GGTTGGAAACTTTCTGATTTGATGTTTGTGACGAAGCGTGGCTTATCTGAT
genomic: TGTTGTTGCTGGGGCTATCGGCTATTTATACATAAGG-TGGAAGGTAAAAgtaatcactg ... tgatttacagGGTTGGAAACTTTCTGATTTGATGTTTGTGACGAAGCGTGGCTTATCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGCTATTTATACATAAGGTGGAAGGTAAAAgtaatcactgattctcaacttggcagaagggtgctattgaacaattataaacacatcatcttagactatcagacaagcaaagttttctctttttctctctccttccttttcattttagggcaactgtcataatccacaaaatggggcaatcaagctaactcggtgatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG