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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAATCATCTCAGAGAGGACCTCCAACTTTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAGgtctctcccattcttctctgttctgttgtatctgcagtgtgcttttttcctggaattattaaccataacctattaacctagtgatatttatgttttcttt...

Basic information

species Oryza sativa
transcript LOC_Os01g01070.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01070.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G078711_T01 (Zea mays), 5'ss of exon 4
GTCAATCATCTCAGAGAGGACCTCCAACTTTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAGgtctctcccattcttc-tctgttctgttgtatct-gcagtgtgcttttttcctggaattattaaccataacctattaacctagtgatatttatgttttcttt
|||||| ||||||||||||| || ||| | ||||| |  |||||||| |||||||||||||| || ||||||||||| |||   | |  |   |  | || | |  ||| |||  ||   |   || | |   |  ||||   | | |  || |  | ||  | |    |  |  ||| | 
GTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTTGCTATTGTCACTGTTGATGGTAGACCTGgttagtgctttctatgatttgctatcatgtttcttacaagctaacttatactgtgctttatcttctacatgctgt-gatcttttaactgctg-gccttcatc

upper sequence: LOC_Os01g01070.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G147587_T01 (Zea mays), 5'ss of exon 4
GTCAATCATCTCAGAGAGGACCTCCAACTTTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAGgtctctcccattcttc-tctgttctgttgtat-ctgcagtgtgcttttttcctggaattattaaccataacctattaacctagtgatatttatgttttcttt
|||||||||||||||||||| || ||| | ||||| |  |||||||| ||| | |||||||| || ||||||||||| |||   | |  |   |  | || | | |||| |  | ||   |   || | |   |   |||   | | |  |||| |   |  | |  |    || ||| | 
GTCAATCATCTCAGAGAGGAGCTGCAAATGTTGTCTAAATCAAATCATGTTTCCATTGTCACTGTTGATGGTAGACCTGgttagtgctttctgtgatttgctgtattgtttattacaagttaacttatactgtgctatatcttctacacgctatgatatt--ttacctgctggtcttcatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58593533|gb|CF991841.1|CF991841
EST:     TTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAG                         GCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGCTATT
genomic: TTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAGgtctctccca ... tcttttgcagGCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGCTATT
EST: gi|88421467|gb|CI618591.1|CI618591
EST:     TTGTCCAGGTCAGATCAACGTTGGTATTGTCACCGTCGATGGTAGACCAG                         GCCCTGGTGCTTATGGTATAAAAGCTGTTGTTGCTGGGGCTATCGGCTATT
genomic: TTGTCCAGGTCAAATCAA-GTTGCTATTGTCACCGTCGATGGTAGACCAGgtctctccca ... tcttttgcagGCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGCTATT
EST: gi|88315903|gb|CI618779.1|CI618779
EST:     TTTGTCCAGGTCACATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAG                         GCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGCTATT
genomic: TTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAGgtctctccca ... tcttttgcagGCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGCTATT
EST: gi|58687220|gb|CK075907.1|CK075907
EST:     TTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAG                         GCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGCTATT
genomic: TTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAGgtctctccca ... tcttttgcagGCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGCTATT
EST: gi|33658119|gb|CF280733.1|CF280733
EST:     TTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAG                         GCCCTGGTGCTTATGGTATAATAGCTGTTGTTGCTGGGGCTATCGGCTATT
genomic: TTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAGgtctctccca ... tcttttgcagGCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGCTATT