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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggatccactctcgcgatttctgtgcgtctaatctgtatgtatagggtagcttggcccaatcccccctctctctcgttagcctctagctcgattcgctcctgctcctgtttgttgcttcatttactggagtagcttcgattagctttacttgtttggaaattgcagGAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCGATTTTAGGGATGTGCTCTCTGGTGCCTTCAAG

Basic information

species Oryza sativa
transcript LOC_Os01g01070.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58593533|gb|CF991841.1|CF991841
EST:     AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCG                         GAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
genomic: AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCGgtagggatcc ... gaaattgcagGAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
EST: gi|88421467|gb|CI618591.1|CI618591
EST:     AGCCGCCGTCGGCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCAG                         GAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
genomic: AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCGgtagggatcc ... gaaattgcagGAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
EST: gi|88315903|gb|CI618779.1|CI618779
EST:     AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCG                         GAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
genomic: AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCGgtagggatcc ... gaaattgcagGAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
EST: gi|33658119|gb|CF280733.1|CF280733
EST:     AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCG                         GAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
genomic: AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCGgtagggatcc ... gaaattgcagGAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgcttcatttactggagtagcttcgattagctttacttgtttggaaattgcagGAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCGATTTTAGGGATGTGCTCTCTGGTGCCTTCAAG
     ttcattta  TA-rich tract