1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGAAGTGTTGGAGCAATATTCAATAACATATATGAGTTCACTGGTTTGATTGCTGATGATCAGTACATTTCAGCTGAAAACCTTTCTGAAAACCAGAGGgttagtatatttttaatgttcctttaaggattaacaatggaagttaaatatcctagcaccagttatcttgaattttatttgtctggtctcttttgcccat...
species | Oryza sativa |
transcript | 13113.m00220 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGATGATCAGTACATTTCAGCTGAAAACCTTTCTGAAAACCAGAGG TTGTTTGCGGATACACTAGTGAAACAAGCATATGATGACTGGATCAACGTTEST: gi|86596775|gb|CI286688.1|CI286688
genomic: TTGCTGATGATCAGTACATTTCAGCTGAAAACCTTTCTGAAAACCAGAGGgttagtatat ... tcaactgcagTTGTTTGCGGATACACTAGTGAAACAAGCATATGATGACTGGATCAACGTT
EST: TTGCTGATGATCAGTACATTTCAGCTGAAAACCTTTCTGAAAACCAGAGG TTGTTTGCGGATACACTAGTGAAACAAGCATATGATGACTGGATCAACGTTEST: gi|116875181|gb|EC365689.1|EC365689
genomic: TTGCTGATGATCAGTACATTTCAGCTGAAAACCTTTCTGAAAACCAGAGGgttagtatat ... tcaactgcagTTGTTTGCGGATACACTAGTGAAACAAGCATATGATGACTGGATCAACGTT
EST: ACATTTCAGCTGAAAACCTTTCTGAAAACCAGAGG TTGTTTGCGGATACACTAGTGAAACAAGCATATGATGACTGGATCAACGTT
genomic: ACATTTCAGCTGAAAACCTTTCTGAAAACCAGAGGgttagtatat ... tcaactgcagTTGTTTGCGGATACACTAGTGAAACAAGCATATGATGACTGGATCAACGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAGTGTTGGAGCAATATTCAATAACATATATGAGTTCACTGGTTTGATTGCTGATGATCAGTACATTTCAGCTGAAAACCTTTCTGAAAACCAGAGGgttagtatatttttaatgttcctttaaggattaacaatggaagttaaatatcctagcaccagttatcttgaattttatttgtctggtctcttttgcccat
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA