1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacaggatagtggaacttgttcattatggttacgcctgtcaatgcatctaatgcaggaatacaaatacatgtttctatagtattatctggattttccacattaagttgaccttcatatcccaaataaaaacagGAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCAGTTTAGGTCTAGGCTATCACTACCACTATTTACAGGAGGAAAAGTGGAA
species | Oryza sativa |
transcript | 13113.m00220 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTCAA-GAAG GAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCAEST: gi|29637477|gb|CB642486.1|CB642486
genomic: ATTCAAGGAAGgtacaggata ... ataaaaacagGAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCA
EST: CCTTTAGCCAAATTGGGTCCAGCTGCAACTCCTGCTAGAATTCAAGGAAG GAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCAEST: gi|29622953|gb|CB627964.1|CB627964
genomic: GCTTTAGCCAAATTGGGTCCAGCTGCAACTCCTGCTAGAATTCAAGGAAGgtacaggata ... ataaaaacagGAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCA
EST: GCTTTAGCCAAATTGGGTCCAGCTGCAACTCCTGCTAGAATTCAAGGAAG GAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCAEST: gi|58612983|gb|CK040695.1|CK040695
genomic: GCTTTAGCCAAATTGGGTCCAGCTGCAACTCCTGCTAGAATTCAAGGAAGgtacaggata ... ataaaaacagGAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCA
EST: GCTAGAATTCAAGG-AG GAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCA
genomic: GCTAGAATTCAAGGAAGgtacaggata ... ataaaaacagGAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCA
agtattatctggattttccacattaagttgaccttcatatcccaaataaaaacagGAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCAGTTTAGGTCTAGGCTATCACTACCACTATTTACAGGAGGAAAAGTGGAA
agttgac putative branch site (score: 23)
aaataaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaggatagtggaacttgttcattatggttacgcctgtcaatgcatctaatgcaggaatacaaatacatgtttctatagtattatctggattttccacattaagttgaccttcatatcccaaataaaaacagGAGCTCTCCCAAAAGAATTGAAGGTCCTAGTGGTATCAATCTCCAGCTTCAGTTTAGGTCTAGGCTATCACTACCACTATTTACAGGAGGAAAAGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA