1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAAGGATGGTGCATTTCACAAGAAGCTAAACTCAAATGGAATATACACAGTTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACTgtaagtcttattattcctctttgtaacttatattaagaattttgtttctttaaaactaaaatttggttttcttcttctgatattttcag
species | Oryza sativa |
transcript | 13113.m00220 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACT ATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCATEST: gi|86596775|gb|CI286688.1|CI286688
genomic: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACTgtaagtctta ... atattttcagATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCAT
EST: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACT ATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCATEST: gi|58659064|gb|CK047744.1|CK047744
genomic: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACTgtaagtctta ... atattttcagATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCAT
EST: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACT ATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCATEST: gi|29637477|gb|CB642486.1|CB642486
genomic: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACTgtaagtctta ... atattttcagATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCAT
EST: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACT ATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCATEST: gi|66915738|gb|CX102586.1|CX102586
genomic: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACTgtaagtctta ... atattttcagATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCAT
EST: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACT ATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCATEST: gi|29622953|gb|CB627964.1|CB627964
genomic: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACTgtaagtctta ... atattttcagATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCAT
EST: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACT ATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCAT
genomic: TTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACTgtaagtctta ... atattttcagATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGATGGTGCATTTCACAAGAAGCTAAACTCAAATGGAATATACACAGTTGAACATTTTCTTCAACTTCTTGTTAGAGATCAACAGAAGCTAAGAACTgtaagtcttattattcctctttgtaacttatattaagaattttgtttctttaaaactaaaatttggttttcttcttctgatattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC