1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatatttacttttacttttctctttttctgttcatacaattagtttatatcttcattgatcttgggactcatgcttaacatcaaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACGAGAGGAAAGCCTTGCTTGAGAAATTAGAACAGCAAAAAATTCAGAATT
species | Glycine max |
transcript | GLYMA20G39400.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACEST: gi|20813295|gb|BQ297773.1|BQ297773
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACEST: gi|38191377|gb|CF920583.1|CF920583
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACEST: gi|22524975|gb|BU083786.1|BU083786
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACEST: gi|213600215|gb|DB979794.1|DB979794
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
EST: ACCCAGCCCATCAAG GATGACATC-GTGGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGAAAEST: gi|20813455|gb|BQ297933.1|BQ297933
genomic: ACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGT-GACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGA
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGGTTTCATGTTCEST: gi|15285711|gb|BI469602.1|BI469602
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTC
EST: GCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACEST: gi|5678047|gb|AI939177.1|AI939177
genomic: GCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACEST: gi|120534415|gb|EH262548.1|EH262548
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACEST: gi|38192112|gb|CF921318.1|CF921318
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
EST: AGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACEST: gi|17519150|gb|BM188192.1|BM188192
genomic: AGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGEST: gi|5819909|gb|AI988176.1|AI988176
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAG
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTEST: gi|209701326|gb|BW655921.1|BW655921
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCT
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACEST: gi|10253606|gb|BE821372.1|BE821372
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACEST: gi|120534422|gb|EH262555.1|EH262555
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
EST: TGACTCTTTTTGTGATATTTGCTGGAAGGAA-TTCACCCAGCCCATCAAG GATGACATCGGTGACAAGTCTGTTTTCATGGTCAATTCTCTTCCTGGTGAC
genomic: TGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGgtatatttac ... caaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGAC
caattagtttatatcttcattgatcttgggactcatgcttaacatcaaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACGAGAGGAAAGCCTTGCTTGAGAAATTAGAACAGCAAAAAATTCAGAATT
gcttaac putative branch site (score: 3)
tttatatcttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatttacttttacttttctctttttctgttcatacaattagtttatatcttcattgatcttgggactcatgcttaacatcaaactcaagGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACGAGAGGAAAGCCTTGCTTGAGAAATTAGAACAGCAAAAAATTCAGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA