1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctattgcaatcctggttggctgcattcagctctcttttaccatcacgccatccaaagactctttcgagttaacacatttactgtctaaacaatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATGTGCAATGGATTATGGATAATGAAGAACAAGAAGATTATATATGTGGAC
species | Glycine max |
transcript | GLYMA20G39350.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTG CATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATEST: gi|192316426|gb|FK009279.1|FK009279
genomic: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTGgtacgaactc ... caatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCAT
EST: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTG CATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATEST: gi|14991264|gb|BI316937.1|BI316937
genomic: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTGgtacgaactc ... caatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCAT
EST: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTG CATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATEST: gi|31310348|gb|CD395551.1|CD395551
genomic: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTGgtacgaactc ... caatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCAT
EST: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTG CATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATEST: gi|254328633|gb|GR833005.1|GR833005
genomic: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTGgtacgaactc ... caatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCAT
EST: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTG CATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATEST: gi|31305148|gb|CD390351.1|CD390351
genomic: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTGgtacgaactc ... caatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCAT
EST: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTG CATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATEST: gi|31457054|gb|CD399082.1|CD399082
genomic: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTGgtacgaactc ... caatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCAT
EST: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTG CATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATEST: gi|58021796|gb|CX708537.1|CX708537
genomic: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTGgtacgaactc ... caatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCAT
EST: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTG CATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATEST: gi|254328634|gb|GR833006.1|GR833006
genomic: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTGgtacgaactc ... caatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCAT
EST: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTG CATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCAT
genomic: ATTGTTGTAGTGGATCCTTCGTCTTGGTCTATGGTTCCTGTTCATGACTGgtacgaactc ... caatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCAT
acgccatccaaagactctttcgagttaacacatttactgtctaaacaatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATGTGCAATGGATTATGGATAATGAAGAACAAGAAGATTATATATGTGGAC
gtctaaa putative branch site (score: 3)
taaacaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctattgcaatcctggttggctgcattcagctctcttttaccatcacgccatccaaagactctttcgagttaacacatttactgtctaaacaatatgcagCATTTCTAGCTTAGTGTATTGTATGCGATCAGAAAATGTGGTTTCCGTCATGTGCAATGGATTATGGATAATGAAGAACAAGAAGATTATATATGTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - -tgcaatc
- - - - - - -tggttgg
- - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - cacgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtc