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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACAAAATAGATCACGGAACTGTTACATACTTGGACAAGATAAATTTCCTTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAGgtaattttgttttgtttttttttgccactacccttttagcagaacctaatccattattgtctatatgcaaccaaacaagctagacactcttctcaatatt...

Basic information

species Glycine max
transcript GLYMA20G39350.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8826169|gb|BE209829.1|BE209829
EST:     TTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAG                         ATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
genomic: TTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAGgtaattttgt ... attttttcagATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
EST: gi|19268722|gb|BM884978.1|BM884978
EST:     TTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAG                         ATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
genomic: TTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAGgtaattttgt ... attttttcagATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
EST: gi|22523265|gb|BU082076.1|BU082076
EST:     TTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAG                         ATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
genomic: TTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAGgtaattttgt ... attttttcagATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
EST: gi|254328633|gb|GR833005.1|GR833005
EST:     TTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAG                         ATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
genomic: TTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAGgtaattttgt ... attttttcagATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
EST: gi|58021796|gb|CX708537.1|CX708537
EST:     TTCAAAACAATCTGTTAGCAGCTCACTCAGTTGGGATCGATAATAATGAG                         ATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
genomic: TTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAGgtaattttgt ... attttttcagATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
EST: gi|254328634|gb|GR833006.1|GR833006
EST:     CAGCTCACTCAGTTTGGATCGATAATAATGAG                         ATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT
genomic: CAGCTCACTCAGTTTGGATCGATAATAATGAGgtaattttgt ... attttttcagATATCTCTTCTTTCACGAGCAGGGGTCAAAGTGTCTCACTGTCCTGCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACAAAATAGATCACGGAACTGTTACATACTTGGACAAGATAAATTTCCTTCAAAACAATCTGTTAGCAGCTCACTCAGTTTGGATCGATAATAATGAGgtaattttgttttgtttttttttgccactacccttttagcagaacctaatccattattgtctatatgcaaccaaacaagctagacactcttctcaatatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA