Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGCTGAGGCGTTAGACCTTTCAAGGTTGCAAGTACTTGTGCTTGATCTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAGgtttgctcttcttcgcaagcaattcaatctcgtcgtctctcttctatgattttgcataaatttattaacgttactactgactggcag

Basic information

species Glycine max
transcript GLYMA20G39240.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193483258|gb|FK448511.1|FK448511
EST:     CTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAG                         AGATGAATTCTGGGACCTTTTCAAGAATTATTTCTATCAACCGATGCTTCA
genomic: CTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAGgtttgctctt ... tgactggcagAGATGAATTCTGGGACCTTTTCAAGAATTATTTCTATCAACCGATGCTTCA
EST: gi|208190663|gb|GD991353.1|GD991353
EST:     CTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAG                         AGATGAATTCTGGGACCTTTTCAAGAATTATTTCTATCAACCGATGCTTCA
genomic: CTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAGgtttgctctt ... tgactggcagAGATGAATTCTGGGACCTTTTCAAGAATTATTTCTATCAACCGATGCTTCA
EST: gi|207831291|gb|GD802507.1|GD802507
EST:     CTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAG                         AGATGAATTCTGGGACCTTTTCAAGAATTATTTCTATCAACCGATGCTTCA
genomic: CTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAGgtttgctctt ... tgactggcagAGATGAATTCTGGGACCTTTTCAAGAATTATTTCTATCAACCGATGCTTCA
EST: gi|192319477|gb|FK005917.1|FK005917
EST:     CTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAG                         AGATGAATTCTGGGACCTTTTCAAGAATTATTTCTATCAACCGATGCTTC-
genomic: CTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAGgtttgctctt ... tgactggcagAGATGAATTCTGGGACCTTTTCAAGAATTATTTCTATCAACCGATGCTTCA
EST: gi|207780269|gb|GD752638.1|GD752638
EST:     CTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAG                         AGATGAATTCTGGGACCTTTTCAAGAATTATTTCTATCAACCGATGCTTCA
genomic: CTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACCCTTCCACAAGTCAGgtttgctctt ... tgactggcagAGATGAATTCTGGGACCTTTTCAAGAATTATTTCTATCAACCGATGCTTCA