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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttggttggtcatcccatatccttttacttactaaccatatacttttttttaaatattgtcgtatatcaaactttcatttcagGATAAAGAAGCTAATTGATGCTGAGGCGTTAGACCTTTCAAGGTTGCAAGTACTTGTGCTTGATCTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACC

Basic information

species Glycine max
transcript GLYMA20G39240.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193483258|gb|FK448511.1|FK448511
EST:     ACACCAAGCAG                         GATAAAGAAGCTAATTGATGCTGAGGCGTTAGACCTTTCAAGGTTGCAAGT
genomic: ACACCAAGCAGgttggttggt ... ttcatttcagGATAAAGAAGCTAATTGATGCTGAGGCGTTAGACCTTTCAAGGTTGCAAGT
EST: gi|207777271|gb|GD746938.1|GD746938
EST:     ATTTCTTTGTTAAAAAACCGTGTTAACATTGCTAGCGGCACACCAAGCAG                         GAATAAAAGAAGCTAATTG
genomic: ATTTCTTTGTTAAAAAACCGTGTTAACATTGCTAGCGGCACACCAAGCAGgttggttggt ... ttcatttcagGA-TAAA-GAAGCTAATTG
EST: gi|192319477|gb|FK005917.1|FK005917
EST:     ATTTCTTTGTTAAAAAACCGTGTTAACATTGCTAGCGGCACACCAAGCAG                         GATAAAGAAGCTAATTGATGCTGAGGCGTTAGACCTTTCAAGGTTGCAAGT
genomic: ATTTCTTTGTTAAAAAACCGTGTTAACATTGCTAGCGGCACACCAAGCAGgttggttggt ... ttcatttcagGATAAAGAAGCTAATTGATGCTGAGGCGTTAGACCTTTCAAGGTTGCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactaaccatatacttttttttaaatattgtcgtatatcaaactttcatttcagGATAAAGAAGCTAATTGATGCTGAGGCGTTAGACCTTTCAAGGTTGCAAGTACTTGTGCTTGATCTGCATCCTGATGTAAAGGGCTATTCCTTGTTGACC
 tactaac  putative branch site (score: 0)
                                           ctttcatttc  putative PPT
         atatacttttttttaa  TA-rich tract