Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACCTCCGAAGAAGATGAAGTCTATTCAGTTGCACGATTATTAGCTGATCTTGTTGCTTATCGCGCCTCCGGAACCGGCCATATGGAACTCTTGGCAGgtttcttcaaatttctcatctctgacttggaccatattattgcgatactgttcacctcaccgttaggaatatggcctcaaccaattcaacttcaccttcgtgttacctctttctagtttatgacattgaatttttttgtgttcag

Basic information

species Glycine max
transcript GLYMA20G39210.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39210.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0124g00140.t01 (Vitis vinifera), 5'ss of exon 2
ACTACCTCCGAAGAAGATGAAGTCTATTCAGTTGCACGATTATTAGCTGATCTTGTTGCTTATCGCGCCTCCGGAACCGGCCATATGGAACTCTTGGCAGgtttcttcaaatttctc-----atctctgacttggaccatattattgcgatactgttcacctcaccgttaggaatatggcctcaaccaattcaacttcaccttcgtgttacctctttctagtttatgacattgaatttttttgtgttcag
| | | |  || || ||||| ||  | || || || |||||||||| |||||||||||||||||| || || || || || ||| ||||||||||||||||||  |    | | |       |  | | ||||| |   ||| ||  | | |   | ||  |     || |   | |    | |   ||| |   | ||  | |                                              
AGTGCATTGGAGGAGGATGAGGTTCACTCGGTGGCCCGATTATTAGGTGATCTTGTTGCTTATCGTGCATCAGGCACGGGACATTTGGAACTCTTGGCAGgttagtgttgactacggtatggaatttttacttgcatt-tatgatcacaacaacatgcagtttctttttggtgtttta---ttatgtaatgcttttccaattgc----------------------------------------------