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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataccacctctcctcacctcacctcacctcacctcactctcacctctgcccctttatttaatcaatccactaacgcagGACTACCTCCGAAGAAGATGAAGTCTATTCAGTTGCACGATTATTAGCTGATCTTGTTGCTTATCGCGCCTCCGGAACCGGCCATATGGAACTCTTGGCA

Basic information

species Glycine max
transcript GLYMA20G39210.4
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39210.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0124g00140.t01 (Vitis vinifera), 3'ss of exon 1
----------gtataccacctctc-ctcacctcacctcacctcacct---cactctcacctctgcccctttatttaatcaatccactaacgcagGACTACCTCCGAAGAAGATGAAGTCTATTCAGTTGCACGATTATTAGCTGATCTTGTTGCTTATCGCGCCTCCGGAACCGGCCATATGGAACTCTTGGCA
           | |   |    |  | |||   |  |    | |  |   || ||| |  | | ||  || ||||  | | |  | |||   |||| | | |  || || ||||| ||  | || || || |||||||||| |||||||||||||||||| || || || || || ||| ||||||||||||||
gtaggcttccctgtgttatggttgacccacagaattttgtttaatatttgcattctgattttt-ccttttcatttttttacttgattaatatagGAGTGCATTGGAGGAGGATGAGGTTCACTCGGTGGCCCGATTATTAGGTGATCTTGTTGCTTATCGTGCATCAGGCACGGGACATTTGGAACTCTTGGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacctcacctcactctcacctctgcccctttatttaatcaatccactaacgcagGACTACCTCCGAAGAAGATGAAGTCTATTCAGTTGCACGATTATTAGCTGATCTTGTTGCTTATCGCGCCTCCGGAACCGGCCATATGGAACTCTTGGCA
                                            cactaac  putative branch site (score: 1)
                             tttatttaatcaat  TA-rich tract