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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgccacctacctcacttttgcaactctcattaatacttttattctttcaatcaatctttctctaccattgcagAATCCAAATGGAACCACACGCCCGTATCTATATTCATCATCCTCGTCTCTTCCGTTGCCGTTCTCCAGTGCTTCACCGGATCAGATATTATCAAATGGAG

Basic information

species Glycine max
transcript GLYMA20G39210.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213592523|gb|DB961783.1|DB961783
EST:     CTCTTCCCACCATTTCTCCACCTCTCATTCTAATCACCACTGTCTTTTAG                         AATCCAAATGGAACCACACGCCCGTATCTATATTCATCATCCTCGTCTCTT
genomic: CTCTTCCCACCATTTCTCCACCTCTCATTCTAATCACCACTGTCTTTTAGgtacgccacc ... accattgcagAATCCAAATGGAACCACACGCCCGTATCTATATTCATCATCCTCGTCTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaactctcattaatacttttattctttcaatcaatctttctctaccattgcagAATCCAAATGGAACCACACGCCCGTATCTATATTCATCATCCTCGTCTCTTCCGTTGCCGTTCTCCAGTGCTTCACCGGATCAGATATTATCAAATGGAG
         cattaat  putative branch site (score: 3)
                                    tctttctctaccatt  putative PPT
          attaatacttttattc  TA-rich tract