1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatctgtttctctcatgattattgtgaatttgtgataaacagaatttttatttgtgaggtctagagtcagttagtagtttgatccatgaattggttgcagCTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTATTACCAACTTGCAGCAATCTTCCCAACAGGCCGAAGATGCATTGTCTCAGG
species | Glycine max |
transcript | GLYMA20G39050.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAG CTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTATTEST: gi|209724885|gb|BW669574.1|BW669574
genomic: AGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGgtgagctgat ... ttggttgcagCTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTATT
EST: TGAACTCCTCAAG CTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTA-TEST: gi|254329429|gb|GR838982.1|GR838982
genomic: TGAACTCCTCAAGgtgagctgat ... ttggttgcagCTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTATT
EST: AGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAG CTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTATTEST: gi|192300890|gb|FG992950.1|FG992950
genomic: AGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGgtgagctgat ... ttggttgcagCTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTATT
EST: TCATCTGAACTCCTCAAG CTCCTGGTAAATCAGTTGGAACTTCTGACAGAGCAACAGTTAGTGGGTATTEST: gi|193533054|gb|FK491026.1|FK491026
genomic: TCATCTGAACTCCTCAAGgtgagctgat ... ttggttgcagCTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTATT
EST: AGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAG CTCCTGGTAAATCAGTTGGAACCTCTGACAGAGACAAACAGTTAGTGGGTA
genomic: AGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGgtgagctgat ... ttggttgcagCTCCTGGTAAATCAGTTGGAACCTCTGACAGAG-CAA-CAGTTAGTGGGTA
ttttatttgtgaggtctagagtcagttagtagtttgatccatgaattggttgcagCTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTATTACCAACTTGCAGCAATCTTCCCAACAGGCCGAAGATGCATTGTCTCAGG
gtttgat putative branch site (score: 5)
atgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatctgtttctctcatgattattgtgaatttgtgataaacagaatttttatttgtgaggtctagagtcagttagtagtttgatccatgaattggttgcagCTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTATTACCAACTTGCAGCAATCTTCCCAACAGGCCGAAGATGCATTGTCTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -ctgtttc
- - - - - -ctcatga
- - - - - - - - - - - - - - - - -gataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgaa