1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGgttagtttttcttgttctttttgtctattgaactttcagcttggaaaattaggtgattggtagctggttaaaacatattcttttatttcacaatttttctttcttttctctttgcaagttag
species | Glycine max |
transcript | GLYMA20G39050.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCAAACAATTTCTCGGGGTCCTAGTTAGAAAGTTGATTCCTTTGATAAG TTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAAEST: gi|193592631|gb|FK545709.1|FK545709
genomic: GCCAAACAATTTCTCGGGGTCCT-GTT-G-AAGTTGATTCCTTTGATAAGgttagttttt ... tgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
EST: TGTTGAAGTTGATTCCTTTGATAAG TTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAAEST: gi|207758932|gb|GD730771.1|GD730771
genomic: TGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
EST: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAG TTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAAEST: gi|193341012|gb|FK306364.1|FK306364
genomic: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
EST: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAG TTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAAEST: gi|192300889|gb|FG992949.1|FG992949
genomic: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
EST: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAG TTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
genomic: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGgttagtttttcttgttctttttgtctattgaactttcagcttggaaaattaggtgattggtagctggttaaaacatattcttttatttcacaatttttctttcttttctctttgcaagttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG