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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttcttgttctttttgtctattgaactttcagcttggaaaattaggtgattggtagctggttaaaacatattcttttatttcacaatttttctttcttttctctttgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAAAGATTGCAATTACAAAAGGTTCAATTATCAAATCTGGTCAGTGGGGATA

Basic information

species Glycine max
transcript GLYMA20G39050.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193425579|gb|FK386892.1|FK386892
EST:     GCCAAACAATTTCTCGGGGTCCTAGTTAGAAAGTTGATTCCTTTGATAAG                         TTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
genomic: GCCAAACAATTTCTCGGGGTCCT-GTT-G-AAGTTGATTCCTTTGATAAGgttagttttt ... tgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
EST: gi|193592631|gb|FK545709.1|FK545709
EST:     TGTTGAAGTTGATTCCTTTGATAAG                         TTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
genomic: TGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
EST: gi|207758932|gb|GD730771.1|GD730771
EST:     GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAG                         TTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
genomic: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
EST: gi|193341012|gb|FK306364.1|FK306364
EST:     GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAG                         TTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
genomic: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
EST: gi|192300889|gb|FG992949.1|FG992949
EST:     GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAG                         TTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA
genomic: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaaacatattcttttatttcacaatttttctttcttttctctttgcaagttagTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAAAGATTGCAATTACAAAAGGTTCAATTATCAAATCTGGTCAGTGGGGATA
        tattcttttatttcac  CT-rich tract
       atattcttttatttca  TA-rich tract