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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttgtattcgttaagaattgattaaaaactaataagaaatcaaataaaaatatttggcatctctctaatatccctcactagttgagttttcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTTCGTACATGTTCGTACCGATGCATTGAGGTGACCTAGTACATATGTGATT

Basic information

species Glycine max
transcript GLYMA20G38820.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321154|gb|FK012466.1|FK012466
EST:     CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCT                         ATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
genomic: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCTgtaagatgac ... tcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
EST: gi|10254492|gb|BE822258.1|BE822258
EST:     CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCT                         ATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
genomic: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCTgtaagatgac ... tcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
EST: gi|12691133|gb|BG157469.1|BG157469
EST:     CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCT                         ATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
genomic: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCTgtaagatgac ... tcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
EST: gi|192307404|gb|FK001978.1|FK001978
EST:     CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCT                         ATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
genomic: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCTgtaagatgac ... tcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaaatatttggcatctctctaatatccctcactagttgagttttcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTTCGTACATGTTCGTACCGATGCATTGAGGTGACCTAGTACATATGTGATT
                           ccctcac  putative branch site (score: 3)
                                          ttttcctttgc  putative PPT
                   tctaatat  TA-rich tract