1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCAATAGATGAACTTATTTCCTTAAAGCAGAATACTGGTCAAGAAGATCCAGAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAGgttagattttggaaatccaaaggaacgccgataatcaatcacttactaatttgaagtttttttttggacagtgctgattgaagctcattaaaatgtgtacattttttgttgcaaagcttccttttcttattttaacaacttatcatctacag
species | Glycine max |
transcript | GLYMA20G38820.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGATCCAGAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAG ACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAGEST: gi|10254492|gb|BE822258.1|BE822258
genomic: AAGATCCAGAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAGgttagatttt ... tcatctacagACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAG
EST: AAGATCCAGAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAG ACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAGEST: gi|192307404|gb|FK001978.1|FK001978
genomic: AAGATCCAGAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAGgttagatttt ... tcatctacagACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAG
EST: AAGATCCAGAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAG ACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAGEST: gi|7795657|gb|AW781054.1|AW781054
genomic: AAGATCCAGAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAGgttagatttt ... tcatctacagACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAG
EST: GAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAG ACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAGEST: gi|192321155|gb|FK012467.1|FK012467
genomic: GAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAGgttagatttt ... tcatctacagACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAG
EST: AAGATCCAGAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAG ACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAGEST: gi|7796046|gb|AW781443.1|AW781443
genomic: AAGATCCAGAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAGgttagatttt ... tcatctacagACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAG
EST: GAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAG ACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAG
genomic: GAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAGgttagatttt ... tcatctacagACTGTGACGGATAGTTGGATAGAGAATGCTGTCAATGGGCTGATGGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATAGATGAACTTATTTCCTTAAAGCAGAATACTGGTCAAGAAGATCCAGAACTAGAAGAGGGTGAGTGGCAGATGATGTGGAATTCACAGgttagattttggaaatccaaaggaacgccgataatcaatcacttactaatttgaagtttttttttggacagtgctgattgaagctcattaaaatgtgtacattttttgttgcaaagcttccttttcttattttaacaacttatcatctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG