1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agagcccagtaacattgtttgatcttgtacctgagcccatatagttggatagaggtttagttgttgtagttcttgtttttatgtcttttaatttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTTAAATTTCTTCCATTCAAAGTTCCGTATCCAGTTC
species | Glycine max |
transcript | GLYMA20G38820.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAG GCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAEST: gi|192321155|gb|FK012467.1|FK012467
genomic: GCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAGgttctgtctt ... atttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGA
EST: GCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAG GCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGA
genomic: GCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAGgttctgtctt ... atttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGA
tggatagaggtttagttgttgtagttcttgtttttatgtcttttaatttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTTAAATTTCTTCCATTCAAAGTTCCGTATCCAGTTC
ttttaat putative branch site (score: 3)
ttgtttttatgtcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagcccagtaacattgtttgatcttgtacctgagcccatatagttggatagaggtttagttgttgtagttcttgtttttatgtcttttaatttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTTAAATTTCTTCCATTCAAAGTTCCGTATCCAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC