1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agagcccagtaacattgtttgatcttgtacctgagcccatatagttggatagaggtttagttgttgtagttcttgtttttatgtcttttaatttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTTAAATTTCTTCCATTCAAAGTTCCGTATCCAGTTC
species | Glycine max |
transcript | GLYMA20G38820.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATGCAATATTGTGTCATTTTCTGATGCTATTGGTGAGCTCAAAGTGGAG GCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAEST: gi|192307403|gb|FK001977.1|FK001977
genomic: TATGCAATATTGTGTCATTTTCTGATGCTATTGGTGAGCTCAAAGTGGAGgtaatactaa ... atttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGA
EST: TATGCAATATTGTGTCATTTTCTGATGCTATTGGTGAGCTCAAAGTGGAG GCAGCAGCATCAATTGAAGATGGAAAAAGAATCCATTTTAGGTTTAACAGAEST: gi|6665882|gb|AW277341.1|AW277341
genomic: TATGCAATATTGTGTCATTTTCTGATGCTATTGGTGAGCTCAAAGTGGAGgtaatactaa ... atttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGA
EST: TATGCAATATTGTGTCATTTTCTGATGCTATTGGTGAGCTCAAAGTGGAG GCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTT
genomic: TATGCAATATTGTGTCATTTTCTGATGCTATTGGTGAGCTCAAAGTGGAGgtaatactaa ... atttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTT
tggatagaggtttagttgttgtagttcttgtttttatgtcttttaatttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTTAAATTTCTTCCATTCAAAGTTCCGTATCCAGTTC
ttttaat putative branch site (score: 3)
ttgtttttatgtcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagcccagtaacattgtttgatcttgtacctgagcccatatagttggatagaggtttagttgttgtagttcttgtttttatgtcttttaatttacacagGCAGCAGCATCAATTGAAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTTAAATTTCTTCCATTCAAAGTTCCGTATCCAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - ttgtttg
- - - - - - - - - - - -cttgtac
- - - - - - - - - - - - - - - - -agcccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcttg