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...atttgtattcgttaagaattgattaaaaactaataagaaatcaaataaaaatatttggcatctctctaatatccctcactagttgagttttcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTTCGTACATGTTCGTACCGATGCATTGAGGTGACCTAGTACATATGTGATT
species | Glycine max |
transcript | GLYMA20G38820.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCT ATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTTEST: gi|10254492|gb|BE822258.1|BE822258
genomic: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCTgtaagatgac ... tcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
EST: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCT ATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTTEST: gi|12691133|gb|BG157469.1|BG157469
genomic: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCTgtaagatgac ... tcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
EST: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCT ATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTTEST: gi|192307404|gb|FK001978.1|FK001978
genomic: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCTgtaagatgac ... tcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
EST: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCT ATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
genomic: CCATTCGGATATCCCTTAGAACTGAAAAACAACTTCATATTGGAGCTTCTgtaagatgac ... tcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTT
taaaaatatttggcatctctctaatatccctcactagttgagttttcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTTCGTACATGTTCGTACCGATGCATTGAGGTGACCTAGTACATATGTGATT
ccctcac putative branch site (score: 3)
ttttcctttgc putative PPT
tctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgtattcgttaagaattgattaaaaactaataagaaatcaaataaaaatatttggcatctctctaatatccctcactagttgagttttcctttgcagATACAGTGACGAGAAGCTCAGAGTTAGCCGGGGAAACAACAGTATTCTTTTCGTACATGTTCGTACCGATGCATTGAGGTGACCTAGTACATATGTGATT
- -tgtattc
- - - - - - - - - - - -taaaaac
- - - - - - - - - - - - - - - - ataagaaa
- - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcac