1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aataccagaacaagtgtcatggcctgttcaagacagactctgtaaattgctatatcatgtgtctcaactctcaatgtggtattttatattgctctttcagAGAACCTTTGTTGGGGTTGACTTTTTTAGTGTATTTCAAGAGGTTTATCTTCGAACAAATGATCCACGCGTATGCAATATTGTGTCATTTTCTGATGCTA
species | Glycine max |
transcript | GLYMA20G38820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAG AGAACCTTTGTTGGGGTTGACTTTTTTAGTGTATTTCAAGAGGTTTATCTTEST: gi|192307403|gb|FK001977.1|FK001977
genomic: GCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAGgttctgtctt ... gctctttcagAGAACCTTTGTTGGGGTTGACTTTTTTAGTGTATTTCAAGAGGTTTATCTT
EST: GCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAG AGAACCTTTGTTGGGGTTGACTTTTTTAGTGTATTTCAAGAGGTTTATCTTEST: gi|6665882|gb|AW277341.1|AW277341
genomic: GCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAGgttctgtctt ... gctctttcagAGAACCTTTGTTGGGGTTGACTTTTTTAGTGTATTTCAAGAGGTTTATCTT
EST: GCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAG AGAACCTTTGTTGGGGTTGACTTTTTTAGTGTATTTCAAGAGGTTTATCTT
genomic: GCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAGgttctgtctt ... gctctttcagAGAACCTTTGTTGGGGTTGACTTTTTTAGTGTATTTCAAGAGGTTTATCTT
attgctatatcatgtgtctcaactctcaatgtggtattttatattgctctttcagAGAACCTTTGTTGGGGTTGACTTTTTTAGTGTATTTCAAGAGGTTTATCTTCGAACAAATGATCCACGCGTATGCAATATTGTGTCATTTTCTGATGCTA
ttgctctttc CT-rich tract
tggtattttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataccagaacaagtgtcatggcctgttcaagacagactctgtaaattgctatatcatgtgtctcaactctcaatgtggtattttatattgctctttcagAGAACCTTTGTTGGGGTTGACTTTTTTAGTGTATTTCAAGAGGTTTATCTTCGAACAAATGATCCACGCGTATGCAATATTGTGTCATTTTCTGATGCTA
- - - - - caagtgt
- - - - - - - - -catggcc
- - - - - - - - - - - - - - caagaca
- - - - - - - - - - - - - - - - - - -ctctgta
- - - - - - - - - - - - - - - - - - - - - - - -tgctata
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggta