1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataaaagtgcatataattgttatttaactaaatacaaagagattttttctttttgatgcaccctatgaccacctgtttggcattcttgttgtctaaccagGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCAATATGCATGGCTAAGACTCAGTATTCTTTCTCAGACAATGCTGCAGCAA
species | Glycine max |
transcript | GLYMA20G38740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAG GCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCAEST: gi|58018837|gb|CX705579.1|CX705579
genomic: AGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAGgtgatctcat ... gtctaaccagGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCA
EST: AGGCAATAGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAG GCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCAEST: gi|10256593|gb|BE824359.1|BE824359
genomic: AGGCAATAGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAGgtgatctcat ... gtctaaccagGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCA
EST: AGGCAATAGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAG GCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCAEST: gi|21677925|gb|BQ630276.1|BQ630276
genomic: AGGCAATAGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAGgtgatctcat ... gtctaaccagGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCA
EST: AGGCAATAGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAG GCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCAEST: gi|298193700|gb|HO040348.1|HO040348
genomic: AGGCAATAGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAGgtgatctcat ... gtctaaccagGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCA
EST: AGGCAATAGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAG GCTGAGAAGCAGATTGAGGTGTATAGCAAGCAAGGATTTTCAGGTCTTCCA
genomic: AGGCAATAGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAGgtgatctcat ... gtctaaccagGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCA
tttctttttgatgcaccctatgaccacctgtttggcattcttgttgtctaaccagGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCAATATGCATGGCTAAGACTCAGTATTCTTTCTCAGACAATGCTGCAGCAA
ttttgat putative branch site (score: 4)
ttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaaagtgcatataattgttatttaactaaatacaaagagattttttctttttgatgcaccctatgaccacctgtttggcattcttgttgtctaaccagGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCAATATGCATGGCTAAGACTCAGTATTCTTTCTCAGACAATGCTGCAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattct