1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agtttatctacatgcatgttacaggatacattgaaagtcatagtatctcagttaggaatggtatttattatttgctgaggtatgccttgtcatggttcagGTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCATTGAAGTTCCTGTATCCTGTTGACCTGAGTATAAAAGAGAAAATAGAGG
species | Glycine max |
transcript | GLYMA20G38740.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTATGATGCTGTAATTTGTACCCATCATGCGAATGGTGGCAAAGGAGCC GTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCAEST: gi|7233904|gb|AW569246.1|AW569246
genomic: CTTATGATGCTGTAATTTGTACCCATCATGCGAATGGTGGCAAAGGAGCCgtaagttcat ... catggttcagGTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCA
EST: CTTATGATGCTGTAATTTGTACCCATCATGCGAATGGTGGCAAAGGAGCC GTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCAEST: gi|10256593|gb|BE824359.1|BE824359
genomic: CTTATGATGCTGTAATTTGTACCCATCATGCGAATGGTGGCAAAGGAGCCgtaagttcat ... catggttcagGTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCA
EST: ATCATGCGAATGGTNNNAAAGGNGCC GTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCAEST: gi|21677925|gb|BQ630276.1|BQ630276
genomic: ATCATGCGAATGGTGGCAAAGGAGCCgtaagttcat ... catggttcagGTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCA
EST: AATTTGTACCCATCATGCGAATGGTGGCAAAGGAGCC GTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCA
genomic: AATTTGTACCCATCATGCGAATGGTGGCAAAGGAGCCgtaagttcat ... catggttcagGTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCA
tctcagttaggaatggtatttattatttgctgaggtatgccttgtcatggttcagGTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCATTGAAGTTCCTGTATCCTGTTGACCTGAGTATAAAAGAGAAAATAGAGG
ccttgtc CT-rich tract
aatggtatttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttatctacatgcatgttacaggatacattgaaagtcatagtatctcagttaggaatggtatttattatttgctgaggtatgccttgtcatggttcagGTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCATTGAAGTTCCTGTATCCTGTTGACCTGAGTATAAAAGAGAAAATAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgcc