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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGCAAACTCCGTTGAACCCGTTCATATCTCCCAGATTGCCAAAGACCTCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAGgtaattaatctttcactttctgcacttgagaaagattcagatttgagttagaggaatatcatgatattattagtttatttgtttatgattgattatggta...

Basic information

species Glycine max
transcript GLYMA20G38740.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233770|gb|AW569113.1|AW569113
EST:     TCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAG                         GTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTAT
genomic: TCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAGgtaattaatc ... acatgcacagGTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTAT
EST: gi|33390303|gb|CA853510.1|CA853510
EST:     TCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAG                         GTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTAT
genomic: TCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAGgtaattaatc ... acatgcacagGTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTAT
EST: gi|207806149|gb|GD777898.1|GD777898
EST:     TCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAG                         GTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTAT
genomic: TCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAGgtaattaatc ... acatgcacagGTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTAT
EST: gi|151393904|gb|EV263775.1|EV263775
EST:     TCAACCTTAGTCTCAATCACTATGACCTTTACGGTAAATACAAGGCTAAG                         GTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTAT
genomic: TCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAGgtaattaatc ... acatgcacagGTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTAT
EST: gi|5752485|gb|AI959772.1|AI959772
EST:     TCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAG                         GTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTAT
genomic: TCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAGgtaattaatc ... acatgcacagGTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTAT