1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtccctgttattttagatattcttttagatgttccatgtataaagcatattttgtttattattttttgctcctttgcagGCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTGCCCAAGGACGGGTTTAGTTTGCAGCTACACAGAACTGGTCAAGGCATATATTTCAT
species | Glycine max |
transcript | GLYMA20G38660.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAGAACCCGCCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAG GCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTGCCCAAGGEST: gi|5666950|gb|AI930986.1|AI930986
genomic: CTGAGAACCCGCCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGgtccctgtta ... tcctttgcagGCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTGCCCAAGG
EST: CTGAGAACCCACCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAG GCTCTTGAAGAGATGGCGAAGAAGAATAATGGTACAATCATCTGCCCAAGGEST: gi|193436578|gb|FK402072.1|FK402072
genomic: CTGAGAACCCGCCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGgtccctgtta ... tcctttgcagGCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTGCCCAAGG
EST: CTGAGAACCCACCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAG GCTCTTGAAGAGATGGCGAAGAAGAATAATGGTACAATCATCTGACCCAAGEST: gi|15662642|gb|BI700013.1|BI700013
genomic: CTGAGAACCCGCCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGgtccctgtta ... tcctttgcagGCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTG-CCCAAG
EST: CTGAGAACCCACCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAG GCTCTTGAAGAGATGGCGAAGAAGAATAATGGTACAATCATCTGCCCCAGG
genomic: CTGAGAACCCGCCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGgtccctgtta ... tcctttgcagGCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTGCCCAAGG
ttagatgttccatgtataaagcatattttgtttattattttttgctcctttgcagGCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTGCCCAAGGACGGGTTTAGTTTGCAGCTACACAGAACTGGTCAAGGCATATATTTCAT
tttattattttttgct CT-rich tract
atgtataaagcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccctgttattttagatattcttttagatgttccatgtataaagcatattttgtttattattttttgctcctttgcagGCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTGCCCAAGGACGGGTTTAGTTTGCAGCTACACAGAACTGGTCAAGGCATATATTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT