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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATATCTTGCGCCATGGGGAGCCACCCACATGAAAGAATTACAGCGAGTCATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAGCACATACAAGgtgagcactccttgtgtttgagtgtttctgtgcattaattttataatcacttttaatgcaatagtgttgggaattaggattgtattcatattctttgttg...

Basic information

species Glycine max
transcript GLYMA20G38660.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38660.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03560.t01 (Vitis vinifera), 5'ss of exon 4
GAAATATCTTGCGCCATGGGGAGCCACCCACATGAAAGAATTACAGCGAGTCATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAGCACATACAAGgtgagcac-----tccttgtgtttgagtgtttctgtgcattaattttataatcacttttaatgcaatagtgttgggaattaggattgtattcatattctttgttg
|||  | ||||| ||||||||||| ||| | ||||||||||| ||||| ||||| || ||||| |||||||| ||  |||||||||||   ||||||||||| | | |     || |||| ||    | |||||     || ||| || |   || |        ||  | || || |  || |  |  |||   | ||      
GAAGCACCTTGCACCATGGGGAGCTACCAATATGAAAGAATTGCAGCGGGTCATGGCAACACTGGCTTTTAAGAGCAATACTGAATGTGCAACATACAAGgtaaactcatgtatctttgtcttattatatttctagtacttgattgtagatggacatacttgttcatgatatttggtaaaagaacaggtttccagtacta-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5666950|gb|AI930986.1|AI930986
EST:     CATTGCAACACTAGCTTTTAAAAGGGATACTGAATGT-GCCACATACAAG                         GTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
genomic: CATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAG-CACATACAAGgtgagcactc ... tattttacagGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
EST: gi|15662642|gb|BI700013.1|BI700013
EST:     CATTGCAACACTAGCTTTTAAAAGGGATACTGAATGT-GCCACATACAAG                         GTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
genomic: CATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAGC-ACATACAAGgtgagcactc ... tattttacagGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG