1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gctagaatttttgcttgatattgcatctttgtctatttttgagaagctgctatttcagcactaaaatgttgggaattttcttttgcataatattttacagGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAGGAGTTCTGCAAGTTATATGGCATGACTTTAGAGCCCTTGCTCAATATCT
species | Glycine max |
transcript | GLYMA20G38660.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTGCAACACTAGCTTTTAAAAGGGATACTGAATGT-GCCACATACAAG GTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAGEST: gi|15662642|gb|BI700013.1|BI700013
genomic: CATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAG-CACATACAAGgtgagcactc ... tattttacagGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
EST: CATTGCAACACTAGCTTTTAAAAGGGATACTGAATGT-GCCACATACAAG GTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
genomic: CATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAGC-ACATACAAGgtgagcactc ... tattttacagGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAG
gctgctatttcagcactaaaatgttgggaattttcttttgcataatattttacagGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAGGAGTTCTGCAAGTTATATGGCATGACTTTAGAGCCCTTGCTCAATATCT
cactaaa putative branch site (score: 2)
aattttcttttgcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagaatttttgcttgatattgcatctttgtctatttttgagaagctgctatttcagcactaaaatgttgggaattttcttttgcataatattttacagGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAGGAGTTCTGCAAGTTATATGGCATGACTTTAGAGCCCTTGCTCAATATCT
- - - - - -tgcttga
- - - - - - - - - - -tgcatct
- - - - - - - - - - - - - - - - - - - - - -aagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggg