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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcttgttttggaaatgggaatgatttatcatagaagttgaggatgttattcaagttgtagttagagtttagatactgatgctatttgtgtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGATATGGAATTTGCCGCTTACAACTTGCTTTGTGTCATAATGCATTCAAATA

Basic information

species Glycine max
transcript GLYMA20G38620.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38620.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv13s0067g03720.t01 (Vitis vinifera), 3'ss of exon 4
ttgcttgttttggaaatgggaatgatttat-catagaagttgaggatgttattca-agttgtagttagagtttagatactgatgctatttgtgtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGATATGGAATTTGCCGCTTACAACTTGCTTTGTGTCATAATGCATTCAAATA
|| ||  |||    | ||    | ||   |   ||  | |||  |||   | | | | ||  |  |   || |   ||    |  | |||||| |  | ||||||||||| |||||| |||| |||||||| ||||| |||||||| | ||||||||||||||| ||||||||| ||||||||| |||  |||| || | ||
ttcctcttttgcttagtgccttttataggtatctattatttgccgattaaaataataattagacgtgttgtctgactatct-tattctttgtg-gtctacagTGCCAATCACAGTTGAAAACCCTTTATGCAGAAGGAATTGAGGGATGTGATATGGAATTTGCTGCTTACAACCTGCTTTGTGCCATCTTGCACTCTAGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208220922|gb|GE018058.1|GE018058
EST:     TTTGGGGTACTTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGACAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGA
genomic: TTTGGGG-ACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTG-CAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGA
EST: gi|193396881|gb|FK365015.1|FK365015
EST:     AATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: AATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|193563810|gb|FK517933.1|FK517933
EST:     CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|208207228|gb|GE008451.1|GE008451
EST:     CCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGGTCTGA
genomic: CCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGA-GGGGTCTGA
EST: gi|193682710|gb|FK621764.1|FK621764
EST:     CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTANGCCGAAGGCATTGAGGGGTCTGAT
genomic: CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|193690224|gb|FK627997.1|FK627997
EST:     CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|207822545|gb|GD795208.1|GD795208
EST:     CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|208301196|gb|GE100779.1|GE100779
EST:     TGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: TGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|193532296|gb|FK491976.1|FK491976
EST:     CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|193694976|gb|FK634348.1|FK634348
EST:     CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|208319804|gb|GE110829.1|GE110829
EST:     CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|193454256|gb|FK420823.1|FK420823
EST:     CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|207814153|gb|GD786382.1|GD786382
EST:     GAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: GAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
EST: gi|208284795|gb|GE085609.1|GE085609
EST:     CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG                         TGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT
genomic: CACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAGgtttgttctg ... gtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttattcaagttgtagttagagtttagatactgatgctatttgtgtgaatgcagTGCCAATCTCAGTTGCAAACTCTTTATGCCGAAGGCATTGAGGGGTCTGATATGGAATTTGCCGCTTACAACTTGCTTTGTGTCATAATGCATTCAAATA
                             tactgat  putative branch site (score: 2)
                       tttagata  TA-rich tract