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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAATTCCCAGAAGAATTACCTCTATAAATGTGACCAGTTAAAGTCTATTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcatttgtttgacatattctgacggatagcattctatcattggttctgcttattcttaatatttttcaatttaatagttccccacttcccctactt...

Basic information

species Glycine max
transcript GLYMA20G38620.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38620.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g61930.1 (Oryza sativa), 5'ss of exon 8
TCAAAATTCCCAGAAGAATTACCTCTATAAATGTGACCAGTTAAAGTCTATTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcatttgtttgacatattctgacggata-gcattctatcattggttctgcttattc--ttaatatttttcaatttaatagttccccacttcccctactt
| |||  || ||||||||||| || ||||||||||||||  |||| || ||||| ||||| || ||||||||  | || |  ||  |  | || |||| ||||  | ||   ||  |  | | ||   | ||   | |  || ||   | ||| | | |   ||| |   |||  |    | |  ||    |      ||   
TGAAACATCTCAGAAGAATTATCTGTATAAATGTGACCAACTAAAATCAATTCGGCAAGATCTTACTGTTCAGAGGATTCAGAACGAGCTGACTGTCATGgtagcctttc--ttagcccactttgtgtgttatatactgcattat-actcctgttcactatgttagtccattttcacgggaaatatcatttcacaatgtatcc

upper sequence: GLYMA20G38620.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 9
TCAAAATTCCCAGAAGAATTACCTCTATAAATGTGACCAGTTAAAGTCTATTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcatttgtttgacatattctgacggatagcattctatcattggttctgcttattcttaatatttttcaatttaatagttccccacttcccctactt-------------------------------
|||  |||| || |||||||| || | ||||||||| ||  |||||||||||||||||||||| || || ||||| |||| |||||| |||||||  |||||||  |  ||  |  || ||  || ||  |   |||  ||  | || |    ||  | ||   |  |||  || | ||     |||| ||  | |  ||                               
TCAGGATTCTCAAAAGAATTATCTTTTTAAATGTGATCAACTAAAGTCTATTCGCCAAGACCTCACAGTACAACGGATACACAATCATTTAACAGCTAAGgtacataactgacttcca-ataatgtcgagtgttattgcat-gtaggattcatttcctgttggaacgttt--atcttatttacacccaattagcatgtttataatggttccatgtgcaatctcaatttcag

upper sequence: GLYMA20G38620.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0067g03720.t01 (Vitis vinifera), 5'ss of exon 3
TCAAAATTCCCAGAAGAATTACCTCTATAAATGTGACCAGTTAAAGTCTATTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcatt-tgtttgacatattctgacggatagcattctatcattggttctgct-tattcttaatatttttcaatttaatagttccccacttcccctactt----
||| ||||| || ||||| ||||| ||||||||||| || || || || ||||||||||| || ||||| ||||| |||| |||| |  ||||||| ||||||   ||  |  |||| ||    ||    ||   ||||| | || |||  ||   |  || |  |  |  ||||||  ||  |   | | |     |        
TCAGAATTCTCACAAGAACTACCTTTATAAATGTGATCAATTGAAATCGATTCGCCAAGATCTTACTGTGCAACGGATACACAATGAGCTAACAGTTAAGgtatatatcattcttgatat----tgctatatgttattctctgat-ggtcatgtaatgatcctcctcctcatcaatt-gatgatgtacaaatgaggatgaaaatgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193563810|gb|FK517933.1|FK517933
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|193682710|gb|FK621764.1|FK621764
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|193690224|gb|FK627997.1|FK627997
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|207822545|gb|GD795208.1|GD795208
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|193532296|gb|FK491976.1|FK491976
EST:     CGCCAAGACCTAACTGTTCTAACGTAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: CGCCAAGACCTAACTGTTC-AACG-AATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|193694976|gb|FK634348.1|FK634348
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|193670598|gb|FK612720.1|FK612720
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCAACTAGGAATTTGGGGACCTGTTT
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCA-CT-GGAATTTGGGGACCTGTTT
EST: gi|208319804|gb|GE110829.1|GE110829
EST:     CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAAACAAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGA
genomic: CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATT-AAC-AGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGA
EST: gi|193454256|gb|FK420823.1|FK420823
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|208284795|gb|GE085609.1|GE085609
EST:     CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG