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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaagggcttttggggtggtagtttgtatactctatatccctaattccatatatattttccaacttttctccacatgataactcttgaaacaatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG

Basic information

species Glycine max
transcript GLYMA20G38620.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193563810|gb|FK517933.1|FK517933
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|193682710|gb|FK621764.1|FK621764
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|193690224|gb|FK627997.1|FK627997
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|207822545|gb|GD795208.1|GD795208
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|193532296|gb|FK491976.1|FK491976
EST:     CGCCAAGACCTAACTGTTCTAACGTAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: CGCCAAGACCTAACTGTTC-AACG-AATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|193694976|gb|FK634348.1|FK634348
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|193670598|gb|FK612720.1|FK612720
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCAACTAGGAATTTGGGGACCTGTTT
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCA-CT-GGAATTTGGGGACCTGTTT
EST: gi|208319804|gb|GE110829.1|GE110829
EST:     CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAAACAAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGA
genomic: CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATT-AAC-AGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGA
EST: gi|193454256|gb|FK420823.1|FK420823
EST:     TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: gi|208284795|gb|GE085609.1|GE085609
EST:     CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG                         GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatatatattttccaacttttctccacatgataactcttgaaacaatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG
                             tgataac  putative branch site (score: 2)
     tatatttt  TA-rich tract