Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttgcttgttttagttaatgaaattaatatgtttgccttgtcctgttccactaatataaattaatgtgcgtgcgtgtgtgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATAGAGAACAAGGCTGTATCAGCGGCGGTCTTGGAGACCATGATTGGTGAAC

Basic information

species Glycine max
transcript GLYMA20G38560.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31470107|gb|CD412135.1|CD412135
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|19345874|gb|BM890754.1|BM890754
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|151402700|gb|EV272513.1|EV272513
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|151406746|gb|EV276561.1|EV276561
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192303852|gb|FG998204.1|FG998204
EST:     CACCTGGTGCCTCTGTTTTTTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192322463|gb|FK014944.1|FK014944
EST:     CACCTGGTGCCTCTGTTTTCTACAGACGATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|16348758|gb|BI974353.1|BI974353
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254324146|gb|GR836271.1|GR836271
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254342700|gb|GR858862.1|GR858862
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|58014650|gb|CX701392.1|CX701392
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254341287|gb|GR855015.1|GR855015
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192318493|gb|FK006165.1|FK006165
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|298193229|gb|HO033663.1|HO033663
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAA
EST: gi|37996949|gb|CF808538.1|CF808538
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGANAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|9258679|gb|BE346826.1|BE346826
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAATGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|37994441|gb|CF806187.1|CF806187
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCCACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254323384|gb|GR835885.1|GR835885
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|4286455|gb|AI441049.1|AI441049
EST:     AATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: AATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|151409430|gb|EV279238.1|EV279238
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|16346692|gb|BI972287.1|BI972287
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGG
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGG
EST: gi|151398271|gb|EV268149.1|EV268149
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|151393801|gb|EV263676.1|EV263676
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|9440269|gb|BE440777.1|BE440777
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254341286|gb|GR855014.1|GR855014
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192323433|gb|FK016384.1|FK016384
EST:     CACCTGGCGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|12690858|gb|BG157194.1|BG157194
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACTATACCAGGAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|15815118|gb|BI787393.1|BI787393
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|58022769|gb|CX709510.1|CX709510
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192318494|gb|FK006166.1|FK006166
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192329173|gb|FK019760.1|FK019760
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|37997148|gb|CF808737.1|CF808737
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|298176125|gb|HO015530.1|HO015530
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAA
EST: gi|298164595|gb|HO014240.1|HO014240
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACC
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACC
EST: gi|6846943|gb|AW349233.1|AW349233
EST:     AATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: AATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192330283|gb|FK020568.1|FK020568
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254321507|gb|GR824824.1|GR824824
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192311105|gb|FK004766.1|FK004766
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGATAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|58024380|gb|CX711121.1|CX711121
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAGCAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|14258449|gb|BG881357.1|BG881357
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|298180656|gb|HO022095.1|HO022095
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGA
EST: gi|254321506|gb|GR824823.1|GR824823
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254324145|gb|GR836270.1|GR836270
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254345504|gb|GR851666.1|GR851666
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         G
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacag-
EST: gi|254345504|gb|GR851666.1|GR851666
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         G
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacag-
EST: gi|192303851|gb|FG998203.1|FG998203
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|58016338|gb|CX703080.1|CX703080
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192305269|gb|FG993993.1|FG993993
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|58017958|gb|CX704700.1|CX704700
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAGCAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|151408846|gb|EV278654.1|EV278654
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|17022228|gb|BM093262.1|BM093262
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192311106|gb|FK004767.1|FK004767
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|16348650|gb|BI974245.1|BI974245
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGNGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|10847941|gb|BF070519.1|BF070519
EST:     CACCTGGTGCCTCTGTGTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCATAAAATGATGCTGTAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|58018417|gb|CX705159.1|CX705159
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|17518992|gb|BM188034.1|BM188034
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254348228|gb|GR851907.1|GR851907
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254323946|gb|GR836178.1|GR836178
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|192305268|gb|FG993992.1|FG993992
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254345505|gb|GR851667.1|GR851667
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|254348227|gb|GR851906.1|GR851906
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|21889721|gb|BQ742925.1|BQ742925
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CCTAATTTCTCTGAAGATGCAACAATACCAGAAAAGGAG
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAG
EST: gi|15337210|gb|BI497866.1|BI497866
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATA
EST: gi|298170778|gb|HO015754.1|HO015754
EST:     CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGG                         CTTAGTTTCTCTGAAG
genomic: CACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGgtcagttgct ... tgtcttacagCTTAGTTTCTCTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccttgtcctgttccactaatataaattaatgtgcgtgcgtgtgtgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATAGAGAACAAGGCTGTATCAGCGGCGGTCTTGGAGACCATGATTGGTGAAC
                actaatataaattaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagttgcttgttttagttaatgaaattaatatgtttgccttgtcctgttccactaatataaattaatgtgcgtgcgtgtgtgtcttacagCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATAGAGAACAAGGCTGTATCAGCGGCGGTCTTGGAGACCATGATTGGTGAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA