Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttacgtcagaattaaatgattaatatagatcattaaaaaaataaatctatgaagatgaaaaattaacaatgggaagttgtcttgttgtaaattttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCGCTGAATACTCAAAGAAGGTGATGGAAAACTGCGTGGCACACATGAAGTC

Basic information

species Glycine max
transcript GLYMA20G38560.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19345874|gb|BM890754.1|BM890754
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|151406746|gb|EV276561.1|EV276561
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|19936282|gb|BQ080797.1|BQ080797
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192322463|gb|FK014944.1|FK014944
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|16348758|gb|BI974353.1|BI974353
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254324146|gb|GR836271.1|GR836271
EST:     CACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGA-TCTGCCATTGGCTGGCG
genomic: CACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254342700|gb|GR858862.1|GR858862
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|58014650|gb|CX701392.1|CX701392
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254341287|gb|GR855015.1|GR855015
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298184637|gb|HO029850.1|HO029850
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192318493|gb|FK006165.1|FK006165
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGACATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298193229|gb|HO033663.1|HO033663
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|37996949|gb|CF808538.1|CF808538
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|9258679|gb|BE346826.1|BE346826
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|37994441|gb|CF806187.1|CF806187
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254323384|gb|GR835885.1|GR835885
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|151409430|gb|EV279238.1|EV279238
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|16346692|gb|BI972287.1|BI972287
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|151398271|gb|EV268149.1|EV268149
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|151393801|gb|EV263676.1|EV263676
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|9440269|gb|BE440777.1|BE440777
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254341286|gb|GR855014.1|GR855014
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192323433|gb|FK016384.1|FK016384
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|12690858|gb|BG157194.1|BG157194
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|15815118|gb|BI787393.1|BI787393
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|58022769|gb|CX709510.1|CX709510
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192318494|gb|FK006166.1|FK006166
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGACATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGTTTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192329173|gb|FK019760.1|FK019760
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|37997148|gb|CF808737.1|CF808737
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298176125|gb|HO015530.1|HO015530
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298164595|gb|HO014240.1|HO014240
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298167098|gb|HO010537.1|HO010537
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACGGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192330283|gb|FK020568.1|FK020568
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254321507|gb|GR824824.1|GR824824
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192311105|gb|FK004766.1|FK004766
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|58024380|gb|CX711121.1|CX711121
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|14258449|gb|BG881357.1|BG881357
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298180656|gb|HO022095.1|HO022095
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGGAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254321506|gb|GR824823.1|GR824823
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254324145|gb|GR836270.1|GR836270
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298184051|gb|HO029264.1|HO029264
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254345504|gb|GR851666.1|GR851666
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192303851|gb|FG998203.1|FG998203
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298175709|gb|HO015228.1|HO015228
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|58016338|gb|CX703080.1|CX703080
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192305269|gb|FG993993.1|FG993993
EST:     TTCAGAGGAGTTAGTTCACACTCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|58017958|gb|CX704700.1|CX704700
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|151408846|gb|EV278654.1|EV278654
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192311106|gb|FK004767.1|FK004767
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298168212|gb|HO013475.1|HO013475
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|16348650|gb|BI974245.1|BI974245
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|10847941|gb|BF070519.1|BF070519
EST:     TTCATAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAT                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|58018417|gb|CX705159.1|CX705159
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298185924|gb|HO031085.1|HO031085
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254348228|gb|GR851907.1|GR851907
EST:     TCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GG-CGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|192305268|gb|FG993992.1|FG993992
EST:     TTCAGAGGAGTTAGTTCACACTCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254345505|gb|GR851667.1|GR851667
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|254348227|gb|GR851906.1|GR851906
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|21889721|gb|BQ742925.1|BQ742925
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|15000142|gb|BI320956.1|BI320956
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298184436|gb|HO029649.1|HO029649
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|15337210|gb|BI497866.1|BI497866
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298170778|gb|HO015754.1|HO015754
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
EST: gi|298173453|gb|HO016789.1|HO016789
EST:     TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAG                         GGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG
genomic: TTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGgtaaacctac ... attttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatgaagatgaaaaattaacaatgggaagttgtcttgttgtaaattttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCGCTGAATACTCAAAGAAGGTGATGGAAAACTGCGTGGCACACATGAAGTC
               aattaac  putative branch site (score: 2)
                                              ttttgtt  putative PPT
         atgaaaaattaacaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttacgtcagaattaaatgattaatatagatcattaaaaaaataaatctatgaagatgaaaaattaacaatgggaagttgtcttgttgtaaattttgttagGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCGCTGAATACTCAAAGAAGGTGATGGAAAACTGCGTGGCACACATGAAGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - -tatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat