Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGGCAACGATCAGCGCGGTTCAGGTGGAGTTCCTGGAGTTTCCAGCGGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttcatttaatttctgcatgcctacctccaattaagtttctatgataagaaattaaacaaaagaatgaattgaattatgtatgtatatgcttgtag

Basic information

species Glycine max
transcript GLYMA20G38560.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19345874|gb|BM890754.1|BM890754
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|151406746|gb|EV276561.1|EV276561
EST:     TTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: TTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|19936282|gb|BQ080797.1|BQ080797
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192322463|gb|FK014944.1|FK014944
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|254342700|gb|GR858862.1|GR858862
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|58014650|gb|CX701392.1|CX701392
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTTGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|254341287|gb|GR855015.1|GR855015
EST:     CCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: CCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298184637|gb|HO029850.1|HO029850
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192318493|gb|FK006165.1|FK006165
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298193229|gb|HO033663.1|HO033663
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGGCGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|37996949|gb|CF808538.1|CF808538
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|9258679|gb|BE346826.1|BE346826
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|37994441|gb|CF806187.1|CF806187
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAT
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATA-
EST: gi|41145818|gb|CK606029.1|CK606029
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGC
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGC
EST: gi|254323384|gb|GR835885.1|GR835885
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|151409430|gb|EV279238.1|EV279238
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|16346692|gb|BI972287.1|BI972287
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|151398271|gb|EV268149.1|EV268149
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|151393801|gb|EV263676.1|EV263676
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGGCCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|9440269|gb|BE440777.1|BE440777
EST:     CCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: CCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|254341286|gb|GR855014.1|GR855014
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192323433|gb|FK016384.1|FK016384
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|12690858|gb|BG157194.1|BG157194
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|15815118|gb|BI787393.1|BI787393
EST:     ACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: ACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|58022769|gb|CX709510.1|CX709510
EST:     CACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: CACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192318494|gb|FK006166.1|FK006166
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192329173|gb|FK019760.1|FK019760
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|37997148|gb|CF808737.1|CF808737
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298176125|gb|HO015530.1|HO015530
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298164595|gb|HO014240.1|HO014240
EST:     GTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATA
genomic: GTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCG-CAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATA
EST: gi|298167098|gb|HO010537.1|HO010537
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192330283|gb|FK020568.1|FK020568
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|254321507|gb|GR824824.1|GR824824
EST:     TTACTTCACCAGCCTCCGGCAAGA-CTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: TTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192311105|gb|FK004766.1|FK004766
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|58024380|gb|CX711121.1|CX711121
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|14258449|gb|BG881357.1|BG881357
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298180656|gb|HO022095.1|HO022095
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCGG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|254321506|gb|GR824823.1|GR824823
EST:     TTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: TTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|254324145|gb|GR836270.1|GR836270
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298184051|gb|HO029264.1|HO029264
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|254345504|gb|GR851666.1|GR851666
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192303851|gb|FG998203.1|FG998203
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298175709|gb|HO015228.1|HO015228
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|58016338|gb|CX703080.1|CX703080
EST:     CACCAGCTTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: CACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192305269|gb|FG993993.1|FG993993
EST:     CAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: CAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|58017958|gb|CX704700.1|CX704700
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|151408846|gb|EV278654.1|EV278654
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGGTTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192311106|gb|FK004767.1|FK004767
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298168212|gb|HO013475.1|HO013475
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|16348650|gb|BI974245.1|BI974245
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|10847941|gb|BF070519.1|BF070519
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|58018417|gb|CX705159.1|CX705159
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298168008|gb|HO013271.1|HO013271
EST:     GTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATA
genomic: GTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCG-CAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATA
EST: gi|298185924|gb|HO031085.1|HO031085
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|192305268|gb|FG993992.1|FG993992
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|254348227|gb|GR851906.1|GR851906
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|15000142|gb|BI320956.1|BI320956
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298184436|gb|HO029649.1|HO029649
EST:     GGTGGTTACTTCACCAGCCTCTGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|15337210|gb|BI497866.1|BI497866
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298170778|gb|HO015754.1|HO015754
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATCGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298173453|gb|HO016789.1|HO016789
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAATGGCAACGATCAGCGCGGTTCAGGTGGAGTTCCTGGAGTTTCCAGCGGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttcatttaatttctgcatgcctacctccaattaagtttctatgataagaaattaaacaaaagaatgaattgaattatgtatgtatatgcttgtag

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