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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttcttccagtatgggtgtatgccatttttggagttcatacttcataatgaattgataataaataaatttcttgcactgctgctggttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTTGGAAACAAACTTCTTAAGCCCTATGTTGTTGCTGACCCAGAAATTCAG

Basic information

species Glycine max
transcript GLYMA20G38500.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38500.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0001g15050.t01 (Vitis vinifera), 3'ss of exon 5
---gtaattttcttccagtatgggtgtatgccatttttggagttcatacttcataatgaattgataataaataaatttcttgcactgctgctgg-ttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTTGGAAACAAACTTCTTAAGCCCTATGTTGTTGCTGACCCAGAAATTCAG
    | ||| ||  | ||      || || | | | |     |  ||     ||| | || ||    | |  || ||   |  | || | |||   |   | |||||| ||| | ||||||||||||||||||||||| |||||||||||  | |||||||||||| | |||||||||||||| ||||||||||||
gttatgattatccccaagctccaatg-atacaagtct-aacatggatttcagatagtaaactgtacctga--aatttctctaaaatgtttctgaacttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAAACTTCTTAAGGCATATGTTGTTGCTGATCCAGAAATTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcataatgaattgataataaataaatttcttgcactgctgctggttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTTGGAAACAAACTTCTTAAGCCCTATGTTGTTGCTGACCCAGAAATTCAG
     taatgaattgataata  TA-rich tract