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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attccaattattttctatctatattctttatttttattttctctcttttttctttcttaaaccaaacatagtgtaagtttgtttctttttattcttttagGTCATGGAGGTTCCCGGACTGCAGAATATCTGAAAAGTAATCTGTTTAAGAATTTGAGTAGCCACCCTGACTTTATCAAAGACACAAAGACTGCTATAG

Basic information

species Glycine max
transcript GLYMA20G38500.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38500.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g15050.t01 (Vitis vinifera), 3'ss of exon 2
-attccaattattttctatctatattctttattttt-attttctctcttttttctttcttaaaccaaacatagtgtaagtttgtttctt-tttattct--tttagGTCATGGAGGTTCCCGGACTGCAGAATATCTGAAAAGTAATCTGTTTAAGAATTTGAGTAGCCACCCTGACTTTATCAAAGACACAAAGACTGCTATAG
 |  | ||||  |||  ||    ||     |  ||| | |||  ||       ||||  ||    || ||| || |   ||||  | || |||  ||   ||||||||||||||||||  | || || ||||| || ||||  ||||| || |||||||| ||||||||||| || || |||||||| |||||| | || || |
gaaactaatt--tttgcattgggatggggaaagtttgagtttggcttaccccgctttacta---taatcattgtttttttttggatgttgtttgctccaatttagGTCATGGAGGTTCAAGAACCGCGGAATACCTCAAAAACAATCTTTTCAAGAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttctttcttaaaccaaacatagtgtaagtttgtttctttttattcttttagGTCATGGAGGTTCCCGGACTGCAGAATATCTGAAAAGTAATCTGTTTAAGAATTTGAGTAGCCACCCTGACTTTATCAAAGACACAAAGACTGCTATAG
                                tttgtttctttttatt  CT-rich tract
                                tttgtttctttttatt  TA-rich tract