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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGGAGGTTCCCGGACTGCAGAATATCTGAAAAGTAATCTGTTTAAGAATTTGAGTAGCCACCCTGACTTTATCAAAGACACAAAGACTGCTATAGgtatatacttcatttttgttaaattataggatgcagtaaacttttgctatcacattacagttgtttggtttgcaacctggacagtgtaaatattaacatgttttttgtctaattatttgtttgattgcag

Basic information

species Glycine max
transcript GLYMA20G38500.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38500.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g15050.t01 (Vitis vinifera), 5'ss of exon 3
GTCATGGAGGTTCCCGGACTGCAGAATATCTGAAAAGTAATCTGTTTAAGAATTTGAGTAGCCACCCTGACTTTATCAAAGACACAAAGACTGCTATAGgtatatacttcatttttgttaaattataggatgcagtaaacttttgctatcacattac--agttgtttggtttgcaacctggacagtgtaaatattaacatgttttttgtctaattatttgtttgattgcag
|||||||||||||  | || || ||||| || ||||  ||||| || |||||||| ||||||||||| || || |||||||| |||||| | || || |||||         | ||| |  ||  || ||   |  ||  | ||||||||   || |   || | ||  ||   |||   ||   |   | |                                       
GTCATGGAGGTTCAAGAACCGCGGAATACCTCAAAAACAATCTTTTCAAGAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatga-------tgttggtggatcttatgag--aacaatttcttgctatcttttttcctggtgggttatttcataac--agaagattctattgcag-----------------------------------