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gtgagacatgtgtaacctttgaattgaatttattcattgtaaatttaacacgacttgtaataatcaatgagtggttgtttgtaatgtagGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGG
species | Glycine max |
transcript | GLYMA20G36690.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATCTTGCTTCCTCT GTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTEST: gi|193553278|gb|FK509957.1|FK509957
genomic: TGATCTTGCTTCCTCTgtgagacatg ... tgtaatgtagGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCT
EST: GTGATTTTGGACTTGCCAAAATGTTGACTTCGGATGATCTTGCTTCCTCT GTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCT
genomic: GTGATTTTGGACTTGCCAAAATGTTGACTTCGGATGATCTTGCTTCCTCTgtgagacatg ... tgtaatgtagGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCT
cattgtaaatttaacacgacttgtaataatcaatgagtggttgtttgtaatgtagGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGG
atttaac putative branch site (score: 3)
ttgtaataatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagacatgtgtaacctttgaattgaatttattcattgtaaatttaacacgacttgtaataatcaatgagtggttgtttgtaatgtagGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT