1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtcagtggtttaaacagttattcaaatagggcgctaaatgattatcttgttactttttctaaaatatttccctagcagccactctcaaatgttgacatgaaaatgtgaaattgtatgtggatatgtatgattgacaccatactactgacatttatttcttatggcctgtatagATGGAGCTTATCTCTAAATTAAGAAACCCATTCATTGTGGAGTACAAAGATTCATGGGTAGAAAAG
species | Glycine max |
transcript | GLYMA20G36690.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAG ATGGAGCTTATCTCTAAATTAAGAAAEST: gi|6454450|gb|AW185133.1|AW185133
genomic: TTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAGgtcagtggtt ... gcctgtatagATGGAGCTTATCTCTAAATTAAGAAA
EST: TTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAG ATGGAGCTTATCTCTAAATTAAGAAACCCATTCATTGTGGAGTACAAAGATEST: gi|193319807|gb|FK285202.1|FK285202
genomic: TTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAGgtcagtggtt ... gcctgtatagATGGAGCTTATCTCTAAATTAAGAAACCCATTCATTGTGGAGTACAAAGAT
EST: TTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAG ATGGAGCTTAT
genomic: TTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAGgtcagtggtt ... gcctgtatagATGGAGCTTAT
ggatatgtatgattgacaccatactactgacatttatttcttatggcctgtatagATGGAGCTTATCTCTAAATTAAGAAACCCATTCATTGTGGAGTACAAAGATTCATGGGTAGAAAAG
tactgac putative branch site (score: 1)
acatttatttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtggtttaaacagttattcaaatagggcgctaaatgattatcttgttactttttctaaaatatttccctagcagccactctcaaatgttgacatgaaaatgtgaaattgtatgtggatatgtatgattgacaccatactactgacatttatttcttatggcctgtatagATGGAGCTTATCTCTAAATTAAGAAACCCATTCATTGTGGAGTACAAAGATTCATGGGTAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG