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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaatctcaaatatggtttaattatttacctcccctccattttttttgtcatctaatctgtttgtaaggatttaacgtgtttgacttggaatgtatccagGGGCGGGAATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATA

Basic information

species Glycine max
transcript GLYMA20G36690.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41146133|gb|CK606344.1|CK606344
EST:     CGTGTTCAACTTCAACTCGCTTCTCGCAACCACCGACTCACTCAACTCAG                         GGGCGGGAATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTT
genomic: CGTGTTCAACTTCAACTCGCTTCTCGCAACCACCGACTCACTCAACTCAGgtgcattttc ... atgtatccagGGGCGGGAATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTT
EST: gi|41145529|gb|CK605740.1|CK605740
EST:     CGTGTTCAACTTCAACTCGCTTCTCGCAACCACCGACTCACTCAACTCAG                         GGGCGGGAATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTT
genomic: CGTGTTCAACTTCAACTCGCTTCTCGCAACCACCGACTCACTCAACTCAGgtgcattttc ... atgtatccagGGGCGGGAATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTT
EST: gi|193694005|gb|FK630241.1|FK630241
EST:     CGTGTTCAACTTCAACTCGCTTCTCGCAACCACCGACTCACTCAACTCAG                         GGGCGGGAATTCTCTTACTAAATTGAT
genomic: CGTGTTCAACTTCAACTCGCTTCTCGCAACCACCGACTCACTCAACTCAGgtgcattttc ... atgtatccagGGGCGGGAATTCTCTTACTAAATTGAT
EST: gi|6454450|gb|AW185133.1|AW185133
EST:     CGTGTTCAACTTCAACTCGCTTCTCGCAACCACCGACTCACTCAACTCAG                         GGGCGGGAATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTT
genomic: CGTGTTCAACTTCAACTCGCTTCTCGCAACCACCGACTCACTCAACTCAGgtgcattttc ... atgtatccagGGGCGGGAATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTT
EST: gi|193319807|gb|FK285202.1|FK285202
EST:     CAACTTCAACTCGCTTCTCGCAACCACCGACTCACTCAACTCAG                         GGGCGGGAATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTT
genomic: CAACTTCAACTCGCTTCTCGCAACCACCGACTCACTCAACTCAGgtgcattttc ... atgtatccagGGGCGGGAATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcatctaatctgtttgtaaggatttaacgtgtttgacttggaatgtatccagGGGCGGGAATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATA
                        atttaa  TA-rich tract