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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGCACGGTGAAAACAAGTAAAGGCTCCATGTCTGTGCTTGTTTGTGGGGATCGAGAAAAACCCGCTCTAATAACCTACCCAGACGTGGCTCTCAATTgtaagtttgtaaccttatttatattgcttttgtttttaatatgaatggatttgctcacaaaatgttccatgtcttgtctatgcggtttggtgaagatgtttagaattagaagcaaagcaaccttttgtttttgcaattttggattactgtataattaccacaacttgattttggccttttctgcag

Basic information

species Glycine max
transcript GLYMA20G36650.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36650.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0030g01790.t01 (Vitis vinifera), 5'ss of exon 2
GAATGCACGGTGAAAACAAGTAAAGGCTCCATGTCTGTGCTTGTTTGTGGGGATCGAGAAAAACCCGCTCTAATAACCTACCCAGACGTGGCTCTCAATTgtaagtttgtaaccttatttatattgcttttgtttttaatatgaatggatttgctcacaaaatgttccatgtcttgtctatgcggtttggtgaa-gatgtttagaattagaagcaaagcaaccttttgtttttgcaattttggattactgtataattaccacaacttgattttggccttttctgcag
|||||   |||||| ||||| ||||| || || |||||  |||||||||||||||  ||||| || ||| | ||||| |||||||| || ||||||||||||| |  |     ||| ||||| ||   ||     ||  |    ||     || |     |        ||    ||   || |||||  |  |  ||||| |                                                                                    
GAATGTGTGGTGAAGACAAGCAAAGGTTCAATATCTGTTTTTGTTTGTGGGGATCAGGAAAAGCCTGCTTTGATAACATACCCAGATGTTGCTCTCAATTgtatgcctcatttcttgtttatgtt---ttgcaaattggtgcttatttgcctgtttttggagatagttttggtgggttcttgtggtttaatccataatgttga------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297072|gb|FG992008.1|FG992008
EST:     GGATCGAGAAAAACCCGCTCTAATAACCTACCCAGACGTGGCTCTCAATT                         ATGTCTCTTGTTTCCAGGGTCTGTTGTTCTGCCCAGAGGCAGCTTCTTTGT
genomic: GGATCGAGAAAAACCCGCTCTAATAACCTACCCAGACGTGGCTCTCAATTgtaagtttgt ... ttttctgcagATGTCTCTTGTTTCCAGGGTCTGTTGTTCTGCCCAGAGGCAGCTTCTTTGT
EST: gi|18039748|gb|BM308042.1|BM308042
EST:     GGATCGAGAAAAACCCGCTCTAATAACCTACCCAGACGTGGCTCTCAATT                         ATGTCTCTTGTTTCCAGGGTCTGTTGTTCTGCCCAGAGGCAGCTTCTTTGT
genomic: GGATCGAGAAAAACCCGCTCTAATAACCTACCCAGACGTGGCTCTCAATTgtaagtttgt ... ttttctgcagATGTCTCTTGTTTCCAGGGTCTGTTGTTCTGCCCAGAGGCAGCTTCTTTGT