1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGTAAAACACTTATATTTGCAGGTGAGAGTAGTCCATTCCATGCTGAATCTGTGTACATGAGCTCAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgtccattcatttcatgagtcaacatatataacttatactcagctgcctccttaaaaatctagttgagaagacaaacagaaataacgtgatattttataatacttgctcag
species | Glycine max |
transcript | GLYMA20G36650.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ACAAAATCTGCGCACTTGTCGAG GTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATAEST: gi|193698402|gb|FK641559.1|FK641559
genomic: ACAAAATCTGCGCACTTGTTGAGgtaggttgtc ... acttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
EST: CTGCGCACTTGTTGAG GTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATAEST: gi|15662976|gb|BI700347.1|BI700347
genomic: CTGCGCACTTGTTGAGgtaggttgtc ... acttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
EST: CTGTGTACATGAGCTCAAAAATGAACCACAAAATCTGCGCACTTGTTGAG GTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATAEST: gi|208185505|gb|GD982018.1|GD982018
genomic: CTGTGTACATGAGCTCAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgtc ... acttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
EST: CTGTGTACATGAGCTCAAAAATGAACCACAAAATCTGCGCACTTGTCGAG GTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGTGTACATGAGCTCAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgtc ... acttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTAAAACACTTATATTTGCAGGTGAGAGTAGTCCATTCCATGCTGAATCTGTGTACATGAGCTCAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgtccattcatttcatgagtcaacatatataacttatactcagctgcctccttaaaaatctagttgagaagacaaacagaaataacgtgatattttataatacttgctcag
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