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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgtccattcatttcatgagtcaacatatataacttatactcagctgcctccttaaaaatctagttgagaagacaaacagaaataacgtgatattttataatacttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATAACACCACTTGAGCGTTTCTTAATGGGTTTTGGCTACCACAGACAAACAC

Basic information

species Glycine max
transcript GLYMA20G36650.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36650.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0030g01790.t01 (Vitis vinifera), 3'ss of exon 10
gtaggttgtccattcatttcatgagtcaacatatataacttatactcagctgcctccttaaaaatctagttgagaagacaaacagaaataacgtgat-attttataatacttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATAACACCACTTGAGCGTTTCTTAATGGGTTTTGGCTACCACAGACAAACAC
         |||   |  |  |  ||     | | |   || | ||     || |   | | || ||   |   |  || |         | ||||| | |||||   |      ||| ||||||||||||||||| |||| |||||||| |||||| || ||||| |||  ||  ||||||  |||||||||||||| || ||| |||| |||   |
-------aaccagggaaattttttgt-----tgtgttctttttcctttctggcttgaattataacctgcattgaagtaccatagattgagatgtgatcaatttatgtaa------cagATTCAGGCTTGTGGCTCACTAGTGACAGAAGAACACCCATATGCCATGCTAATTCCCATTGAGCTGTTCTTAATGGGTTTCGGGTACTACAGGCAACTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207756174|gb|GD727073.1|GD727073
EST:     ACAAAATCTGCGCACTTGTCGAG                         GTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
genomic: ACAAAATCTGCGCACTTGTTGAGgtaggttgtc ... acttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
EST: gi|193698402|gb|FK641559.1|FK641559
EST:     CTGCGCACTTGTTGAG                         GTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGCGCACTTGTTGAGgtaggttgtc ... acttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
EST: gi|15662976|gb|BI700347.1|BI700347
EST:     CTGTGTACATGAGCTCAAAAATGAACCACAAAATCTGCGCACTTGTTGAG                         GTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGTGTACATGAGCTCAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgtc ... acttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
EST: gi|208185505|gb|GD982018.1|GD982018
EST:     CTGTGTACATGAGCTCAAAAATGAACCACAAAATCTGCGCACTTGTCGAG                         GTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGTGTACATGAGCTCAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgtc ... acttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctagttgagaagacaaacagaaataacgtgatattttataatacttgctcagGTTCAGGCTTGTGGCTCATTAGTTACAGAAGAGCACCCAAATTCCATGATAACACCACTTGAGCGTTTCTTAATGGGTTTTGGCTACCACAGACAAACAC
                       aaataac  putative branch site (score: 2)
                                              cttgctc  putative PPT
                       aaataacgtgatattt  TA-rich tract