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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggattcctcatctaactcgagttctctttatgtttagttatgattgttgtgctagtgtgagcattttttatttcctgttcagatttttgtttga...

Basic information

species Glycine max
transcript GLYMA20G36570.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G068255_T01 (Zea mays), 5'ss of exon 2
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggattcctcatctaactcgagttctctttatgtttagttatgattgttgtgctagtgtgagcattttttatttcctgttcagatttttgtttga-----
| || || ||||| |||||||| ||||| || ||||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||| | ||||  ||    | ||| |   || |       |||| | |||  |   || ||   | | |   |  ||| |||      |  || ||  ||||||        
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTCTCCAAAGCATTTTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaacgg----cccatttttatccaaaaaagcttatttgtagcaaaacttattcaacga-tccaattattgtttgccaggttctctgaaatttgttatgtaata

upper sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G068255_T02 (Zea mays), 5'ss of exon 1
--ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggattcctcatctaactcgagttctctttatgtttagttatgattgttgtgctagtgtgagcattttttatttcctgttcagatttttgtttga-----
  | || || ||||| |||||||| ||||| || ||||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||| | ||||  ||    | ||| |   || |       |||| | |||  |   || ||   | | |   |  ||| |||      |  || ||  ||||||        
AGACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTCTCCAAAGCATTTTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaacgg----cccatttttatccaaaaaagcttatttgtagcaaaacttattcaacga-tccaattattgtttgccaggttctctgaaatttgttatgtaata

upper sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G016106_T02 (Zea mays), 5'ss of exon 1
--ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggattcctcatctaactcgagttctctttatgtttagttatgattgttg-tgctagtgtgagcattttttatttcctgttcagatttttgtttga--
  | || || ||||| |||||||| ||||| || ||||| || |||||||||||||| || |||||||| ||||||||||| ||||| ||| ||||| | |||| |  || |||  |    |   ||   | ||| |    |    || |      | | | | |    ||    ||  |  ||| || ||| || |  |   
AGACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaat--atccctttttatccaaaaggcttatttgtagcaaaacttgttcaacaatccaattattgttatgcaatacctattgt-caaattcttttaggggc

upper sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 2
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggattcctcatctaactcgagttctctttatgtttagttatgattgttg-tgctagtgtgagcattttttatttcctgttcagatttttgtttga--
| || || ||||| |||||||| ||||| || ||||| || |||||||||||||| || |||||||| ||||||||||| ||||| ||| ||||| | |||| |  || |||  |    |   ||   | ||| |    |    || |      | | | | |    ||    ||  |  ||| || ||| || |  |   
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaat--atccctttttatccaaaaggcttatttgtagcaaaacttgttcaacaatccaattattgttatgcaatacctattgt-caaattcttttaggggc

upper sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G04500.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggattcctcatctaactcgagttctcttta-tgtttagttatgattgttgtgctagtgtgagcattttttatttc-ctgttcagatttttgtttga
|||| ||||| || |||||||| |||||||| ||||| ||||||||||||||||| || ||||||||| |  | || ||  |||| ||  ||||    |||| ||  |   || |||    |   |   ||||| || ||| | ||   || | | ||| ||     || ||| |   |  |  |||  |  ||||    
ATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATGTTCTTTCCAAAGCATTTGCTAGATTCCCCACCTTCAATATGGCCAAGgtaactgtgtatatc-tctcctccttttcggctttagtgattattcatatctggtttccta-tgaacatatatttgagaacattagtcatgtgattgtagtc

upper sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0018g01710.t01 (Vitis vinifera), 5'ss of exon 3
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggattcctcatctaactcgagttctctttatgtttagttatgattgttgt-gctagtgtgagcattttttatt-tcctgttcagatttttgtttga
||||||||||  | || ||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||  ||||  ||||||||  ||   ||    || |    | || ||| |  ||||  |   |  |  | | || |||  || |  | |||| |  | ||  |  | |  | |  
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttatatttccctcaagttttatacttttttttattaggaactctaatattagatattgtttgcttggtgtattgttgttttttgcatatcctct--

upper sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggattcctcatctaactcgagttctctttatgtttagttatgattgttgtgctagtgtgagcattttttatttcctgttcagatttttgtttga---
||||||||||  | || ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||  ||||   |||||||   |   ||||  || |    ||  | || | |||| |    ||| |  |  |||  |     ||  ||  | | || | || ||||||        
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagtttctatttcattcaagttc--tttaccttttctttattaggaattctattattag-atatcatttgcttggtgcatggtgagctttttgcccattct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208107575|gb|GD906090.1|GD906090
EST:     ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGA                         GTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggat ... tcttgactagGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
EST: gi|193601564|gb|FK549455.1|FK549455
EST:     ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGA                         GTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggat ... tcttgactagGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
EST: gi|31462737|gb|CD404765.1|CD404765
EST:     ATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGA                         GTTGTCAGAGACAAGCGGACTGGTTATACCAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggat ... tcttgactagGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC